Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1604 ATGGTCGAGCCTCCTGCGGCAGCAGCAACCTCAGAATCAGACACAACAGGAAACACCAACACTCCTTCACCGTCTTCTTCATCCTCGTCGTCAAGTTCTAAGAAGCGAGCAAGAGACAACAACAATAATAGTAACAGCAGCAGTAACAAGCATTCTGTGTATAGAGGTGTCCGAATGCGCACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAGAAGAACAGAATCTGGCTCGGAACGTTCGCCACAGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTGACGATAAAAGGCTCCTCCGCCATCCTTAACTTCCCCGAACTGGCGGCCACGCTGCCCCGGCCGGCCTCCAACTCCCCCCGCGACGTGCAGGCCGCGGCCGCCAAGGCGGCGTCCATGGAGGCGCCGCCGAGGACCCCTCCCTCGCCGGCCTCCACGCCGGCGGAGGATGACCTCGGCGAGATTGTGGAGCTGCCACCGCTGGGAACGAGTTTCGACTCGCCCATCGACCCGATGAGTACCGAGTTCGTGTTCCTGGACATGGACGACGGGTGGCCCTATTCTCACCCATGGTACCACGGCATTTATGATGGTGGGTACTTGATTAGCGACATCAACAACATGGTTTCAATGCAAGAGTCAGAGAGCATGCTTCTTTCCTTGTGGCCTTCAACTTAA 690 0.587 MVEPPAAAATSESDTTGNTNTPSPSSSSSSSSSKKRARDNNNNSNSSSNKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAATLPRPASNSPRDVQAAAAKAASMEAPPRTPPSPASTPAEDDLGEIVELPPLGTSFDSPIDPMSTEFVFLDMDDGWPYSHPWYHGIYDGGYLISDINNMVSMQESESMLLSLWPST* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1604 229 MobiDBLite consensus disorder prediction 116 154 - -
Gso9g1604 229 MobiDBLite consensus disorder prediction 9 54 - -
Gso9g1604 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 218 - -
Gso9g1604 229 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Gso9g1604 229 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Gso9g1604 229 MobiDBLite consensus disorder prediction 1 55 - -
Gso9g1604 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 10 218 - -
Gso9g1604 229 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1604 Gso-Chr9 40331491 40333082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1604 21 195 AP2-EREBP Transcription Factor Family AT5G11590 52.308 6.26e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso9g1604 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1604 K09286 - gmx:100784134 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1940 5 42538695 42539704 Gso9g1604 9 40331491 40333082 PCT
Gso8g0298 8 2793630 2795001 Gso9g1604 9 40331491 40333082 PCT
Gso9g1604 9 40331491 40333082 Gso5g1940 5 42538695 42539704 PCT
Gso9g1604 9 40331491 40333082 Gso8g0298 8 2793630 2795001 PCT