Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1602 ATGTCTGAATTGAAGGGAGATGACCATCTTATAAAGAATCTTCGACGAGTAGCAAGAAATGTGAATAAGATTGTTGCTGAAGGACAAATATCCAGAGCACCTTCTAGTTATCCTTCTTTGGTTTGTAGGGACCTCAGCAATGGTCTAGAAGCTATACCCATTCCAGTTACTAATGAGATTGATGATTCTCCTATCACACCTAACGGCTTTACATATATCACATCTAGCCAAGTTGCAAACAACGTGAAAGTTCCATCTAGTGATGACTATGGTTGTCAATGCAAAGGAAATAGTTGTAGAACTAACAAGAATTGTTGTTTTAGACTTAATAACATGTATCCATATGTTCGTCGTCGGAAATGTAGCAGATTGATCCAAGCTAGAGATATTGTGTTTGAATGTGGTCCAAGATGTGGATGTGGTCCTGATTGTGGCAGTAGAGTATCTCAGAAGGGTTTGCAGTACCAGCTTGAGGTTTATCGTACGTCTGACAAAGGATGGGCTGTTAGAACTAGGAATTTTATTCCTGTTGGAGCTTTAGTTTGTGAACTTGTTGGGGTACTAAAGAGAACTGAAGACTTGGATAATGATTCACACAATGACTACATAGTTGAAATTGATGGCTGGGAAACTATAAAAGAGATAGGTGGACGAAAGAAACGATTGCCTGACGAGCCATTGCCTGCAAAAATTTTCCTTGAAAATAAGGATGATGAGACAACCAAAAATGATCCAGAGTTCTGTATAGATTGTAGTTCTTTTGGTAATGTGGCTAGGTTCATCAACCATAGTTGTGATCCTAACCTATTTGTTCAATGTGTTTTGAACTCCCATTATGGGATCAAACAAGCTCGAATTGTACTATTTGCTGGAAGAAACATACGTCCTAAACAGGAACTTACTTATGACTATGGTTACCGACTTGATAGTGTTGCTGATGTCGATGGAAAAATCAAGCAATTGCCATGTTACTGTGGTGAAGCTACTTGTCGCAAGCGTTTATACTAG 1008 0.3879 MSELKGDDHLIKNLRRVARNVNKIVAEGQISRAPSSYPSLVCRDLSNGLEAIPIPVTNEIDDSPITPNGFTYITSSQVANNVKVPSSDDYGCQCKGNSCRTNKNCCFRLNNMYPYVRRRKCSRLIQARDIVFECGPRCGCGPDCGSRVSQKGLQYQLEVYRTSDKGWAVRTRNFIPVGALVCELVGVLKRTEDLDNDSHNDYIVEIDGWETIKEIGGRKKRLPDEPLPAKIFLENKDDETTKNDPEFCIDCSSFGNVARFINHSCDPNLFVQCVLNSHYGIKQARIVLFAGRNIRPKQELTYDYGYRLDSVADVDGKIKQLPCYCGEATCRKRLY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1602 335 Gene3D SET domain 36 335 IPR046341 -
Gso9g1602 335 ProSiteProfiles Pre-SET domain profile. 90 152 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso9g1602 335 SMART preset_2 42 139 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso9g1602 335 SMART set_7 155 311 IPR001214 GO:0005515
Gso9g1602 335 Pfam Pre-SET motif 46 147 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso9g1602 335 ProSiteProfiles SET domain profile. 155 305 IPR001214 GO:0005515
Gso9g1602 335 SMART PostSET_3 319 335 IPR003616 -
Gso9g1602 335 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 334 - -
Gso9g1602 335 ProSiteProfiles Post-SET domain profile. 319 335 IPR003616 -
Gso9g1602 335 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4-LIKE ISOFORM X1 1 334 - -
Gso9g1602 335 SUPERFAMILY SET domain 39 311 IPR046341 -
Gso9g1602 335 Pfam SET domain 166 305 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1602 Gso-Chr9 40303274 40308078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1602 28 335 EF-hand Containing Proteins AT5G13960 54.984 7.75e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso9g1602 SET 6.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1602 - K11420 gsj:114425719 690.649