Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1600 ATGGGTTGCATTTACTCGCGAGTCTGCATAGGCGACAATTGCAGAGGCTCAAGCATCAACGGAGACCCCATTATCGCCCGAAACGACGTCGCCGAAGTCGCGAATTTCTCCCCTTCCTCTTCGGATGTTGAAGAAGGCGAAATCAGAGACCAATTGAACCAATTGAGCATCACTCGAGACTCCGAAGCTGGAATCCGGAGACTTGCTAGGGTTTCCGCGCAGTTTCTTCCACCCGACGGTTCCCGAATCGTTAAGATTCCTTCCGGAAACTTCGAATTGCGATACTCGTTCTTGTCGCAACGAGGTTACTACCCCGATGCACTCGATAAAGCTAACCAAGACAGTTTCTGCATCCACACACCTTTTGGTACGAGCCCTAACGACCACTTCTTCGGTGTCTTCGACGGCCATGGCGAGTTCGGAGCTCAGTGTTCTCAGTTCGTGAAGAGGAAACTGTGTGAGAATTTGCTCAGGAACTCCAAATTCCGCGCCGATCCTGTTGAGGCTTGTCACGCGGCGTTTTTAGCGACGAATTCGCAGCTGCACAATGATGTTGTTCTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGAGGGAGGACGATATACGTGGCGAATTCCGGCGATTCAAGGGCGGTGATCGCGGAAAGGAGAGGGAAGGAGGAAGAAGTTGTGGCCGTTGATTTGTCGATTGATCAGACGCCTTTCAGGAGTGATGAGCTTGAGAGGGTGAAAATGTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGAACCCTGATGTGCAGTGTTGGGGCACTGAGGAAGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTATCCGGGGACGGCGTTTACGCGGAGCATTGGTGATTCCATTGCTGAGACTATTGGGGTTGTGGCCAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTGGCCAGTGATGGGGTCTTTGAGTTTCTCTCTAGCCAGACTGTGGTTGAAATGGTTGCAAAATTTAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGGCTCTGGCTGCAGTATGAAACTCGTACAGATGACATTACAGTCATCATTGTGCATGTAAATGGGCTAACTGAATCAGCAAGTTATGGTGATGTTTTGCGAAACCCTGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGCGCTAGAAACCATCGCGTAAGGCATGAATTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGTCAAACCTGGGTTCCTCCATCCTCAGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTTACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAAGTCCAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGATTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTCGGCGACTCAGGAAGAAAAAGATGGGGAGGCACCTAGGGTTTTGCAGCACTACACAGCTGAAAAACTTTCATGCTTTGGAGAACTTGCTCTAATGTACAATAAACCCCTCCAGGCTTCTGTATGTGCTGTTACAAAAGGAACTCTTTGGTCTTTAAAACGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTGTCATCATTGAAGTTGCTTCGGTCTGTAGATCTCCTCTCAAGGTTGTCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAAAAATGAAGTCCTTGCATTGTACATTATCCAAAAGGGACGAGTGAAAATCACTTTGGATTCTGATTTATTGTCTTGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAGTGAGGATGATGTACAGAGCGGAAAAGAACTGTCAATAGAGAAGCCTGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGTGAAAATATTGGTTCCTTGAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGAAAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTCAAGGGATTATTCTAGAAATTATGAATTTTCATCCCTCGATAAGGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACACTATATTCCACTGACTGCTCTGAAATAGGGCTTGCAAATTTTAGAGATTCAGCAGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAAGCTAGGAAAGGAATCACAAGTCTTTAAAGAGAGAGATTTGATTATGGGTATGGGCTCTTTAGCCTGTACACCACAGGTTTTATGCACTTGTGCTGATCTTATGTATGCTGGAATACTTTTAAATACTCGCCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCAGCGCAGTTTTGTGCGGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGGGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAACAGACAGGACATATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCAGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCACTGGCTCCAGAGATTGTTTTGGGAAAAGGCCACGGTTTCCCTGCTGACTGGTGGGCGTTGGGAGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACATCTTCCCGAGACTTTTAGCCCTGAAGCTGTTGATCTCATCTCCAAGCTACTTGAAGTGGAAGAAAACACTAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAATCACCCATGGTTTAATGGTGTTGAATGGGAAGGGATTAGAAACCACACCTTTCCCGTTCCACAGGAAATTATTTCTCGTATAACACAGCACTTGGAAGTTCATTCTGAGGATTGTAGTACTGGTTATCTGGGTTCCCCATTACAGGAGGTAAAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3213 0.4544 MGCIYSRVCIGDNCRGSSINGDPIIARNDVAEVANFSPSSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKIPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRADPVEACHAAFLATNSQLHNDVVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEEEVVAVDLSIDQTPFRSDELERVKMCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESASYGDVLRNPVPQVVEVTGSESPSTFGWSARNHRVRHELSRARLRALENSLENGQTWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVQPGDIIVKQGGEGDCFYVVGSGEFEVSATQEEKDGEAPRVLQHYTAEKLSCFGELALMYNKPLQASVCAVTKGTLWSLKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDKNEVLALYIIQKGRVKITLDSDLLSCPNAYSLKPDIQSEDDVQSGKELSIEKPEGSYFGEWALLGENIGSLSAVAVGDVVCALLTKEKFESVIGSLQKISQEDHKSRDYSRNYEFSSLDKVQLSDLEWRKTLYSTDCSEIGLANFRDSAENLLTLKRFSKPKVKKLGKESQVFKERDLIMGMGSLACTPQVLCTCADLMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGHIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPETFSPEAVDLISKLLEVEENTRLGSQGPDSVKNHPWFNGVEWEGIRNHTFPVPQEIISRITQHLEVHSEDCSTGYLGSPLQEVKELNVPEWLEDW* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1600 1070 Gene3D - 90 388 IPR036457 -
Gso9g1600 1070 ProSiteProfiles cAMP/cGMP binding motif profile. 602 725 IPR000595 -
Gso9g1600 1070 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 37 1070 - -
Gso9g1600 1070 CDD CAP_ED 476 585 IPR000595 -
Gso9g1600 1070 SUPERFAMILY cAMP-binding domain-like 457 586 IPR018490 -
Gso9g1600 1070 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Gso9g1600 1070 Gene3D Transferase(Phosphotransferase) domain 1 843 1028 - -
Gso9g1600 1070 SMART cnmp_10 602 739 IPR000595 -
Gso9g1600 1070 SMART cnmp_10 476 600 IPR000595 -
Gso9g1600 1070 Pfam Cyclic nucleotide-binding domain 495 586 IPR000595 -
Gso9g1600 1070 Pfam Cyclic nucleotide-binding domain 621 724 IPR000595 -
Gso9g1600 1070 SMART serkin_6 765 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1600 1070 SUPERFAMILY Protein kinase-like (PK-like) 750 1040 IPR011009 -
Gso9g1600 1070 ProSiteProfiles Protein kinase domain profile. 757 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1600 1070 Gene3D Phosphorylase Kinase; domain 1 755 842 - -
Gso9g1600 1070 Pfam Protein kinase domain 843 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1600 1070 SUPERFAMILY PP2C-like 82 389 IPR036457 -
Gso9g1600 1070 SUPERFAMILY cAMP-binding domain-like 593 731 IPR018490 -
Gso9g1600 1070 Pfam Protein phosphatase 2C 124 366 IPR001932 -
Gso9g1600 1070 Gene3D Jelly Rolls 442 584 IPR014710 -
Gso9g1600 1070 CDD PP2Cc 110 387 IPR001932 -
Gso9g1600 1070 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 37 1070 - -
Gso9g1600 1070 Gene3D Jelly Rolls 589 742 IPR014710 -
Gso9g1600 1070 ProSiteProfiles PPM-type phosphatase domain profile. 94 387 IPR001932 -
Gso9g1600 1070 CDD CAP_ED 602 725 IPR000595 -
Gso9g1600 1070 ProSiteProfiles cAMP/cGMP binding motif profile. 476 585 IPR000595 -
Gso9g1600 1070 PRINTS cAMP-dependent protein kinase signature 497 511 - -
Gso9g1600 1070 PRINTS cAMP-dependent protein kinase signature 512 526 - -
Gso9g1600 1070 PRINTS cAMP-dependent protein kinase signature 547 556 - -
Gso9g1600 1070 PRINTS cAMP-dependent protein kinase signature 720 732 - -
Gso9g1600 1070 SMART PP2C_4 90 385 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1600 Gso-Chr9 40277568 40287359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1600 1 1070 PP2C-type Phosphatase Gene Family AT2G20050 67.175 0.0 1474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Gso9g1600 PP2C 3.6e-35 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1600 - - gmx:100781992 2104.72