Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1599 ATGAATCAACTTGGTGGTGTTAGCGTTATCCTTCTGGTTCTCTCAGTCTTGTGTTTCCATGTTAGAGCACAGACTTCTGCACCTTCTTCAGGAGATGCTGTCTCCAATTTCCAGCCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTCTTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCATCGCCGCCATGGCGGCGCTTCGGCCGTTGGAGACTCAGAAAATCAACTTACTTTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTCAGATTCTCTGCACTCAAAGGGTTAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAATTCTGAGACTTGTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAGCACTCTACCTGTCCTATTTGCAGGCACAGAGTCAACCCTGAGGACCACACAACCTTCACATATTCAAACAGTTTAAGGATGTTAGCAGGTGAGGAATCTAACATAGAGATCTTGGTTCAGAGAGAAGAGGAAGAGCATCATGGTTCATCAAGATTCAGTGTAATTGGAAGCAGCAGCTTTCGGAAAACGGTCAAGGAAGAAGAATTACTCATCCAAAAAGGAGCAGAAGATAGTGATGGTAACCAGAAAGGGTATCATAAACACAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTCTGAATTCGGAGATGCTCAATGATACATCAAGCAACAGATTCAGCAGCAACCTGGAATCAATTACAAGAGGGGTAGTGGTGGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGGAAGATTTCCTTTGAGAACAAAGTTGTTGGTGCACTAAACAACATCGTTTCAGATCATAAGGAAGATCCTCCTTTTACATCAGATTCTGCACCAAAGTATGTGAACCCGGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTTTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTCTTGAAGGATTCTGATTCCCTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAGAAAGAAGGTCTCTGCAATCTCAGAATAATAAACAACAGCCATTAGATGTATAA 1260 0.4167 MNQLGGVSVILLVLSVLCFHVRAQTSAPSSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCHRRHGGASAVGDSENQLTFVRSRSRFSGIDKTVIESLPFFRFSALKGLKEGLECAVCLSKFEDVEILRLVPKCKHAFHIDCIDHWLEKHSTCPICRHRVNPEDHTTFTYSNSLRMLAGEESNIEILVQREEEEHHGSSRFSVIGSSSFRKTVKEEELLIQKGAEDSDGNQKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNDTSSNRFSSNLESITRGVVVENEQIMNIKEEMERKISFENKVVGALNNIVSDHKEDPPFTSDSAPKYVNPGEKRSMSEITAVSRFGDLGMKMRVLKDSDSLQNNLKEERMRQIWFPIARRTAQWFVNREERRSLQSQNNKQQPLDV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1599 419 SUPERFAMILY RING/U-box 98 167 - -
Gso9g1599 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 413 - -
Gso9g1599 419 SMART ring_2 119 160 IPR001841 -
Gso9g1599 419 CDD RING-H2_PA-TM-RING 118 161 - -
Gso9g1599 419 Pfam Ring finger domain 118 161 IPR001841 -
Gso9g1599 419 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gso9g1599 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 413 - -
Gso9g1599 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 170 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1599 Gso-Chr9 40272122 40273981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1599 9 419 C3H Transcription Factor Family AT4G28890 48.416 2.29e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1599 K10664 - gmx:100806950 813.913