Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1597 ATGGCTTCTTCAATTCGTCCCTCACTTTCTTCCTTCATGTTACCCTCCCTCCGCTCTTGCAACCCTTCTGAAAAGCTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACTGTATCATAAGTTTGGCCTGAAATCTTCTAGGCTTTTAAGACATGATGATAATAAGTGCATGAGAGTGATGGCATCTGGGAACATGTCCACAGCTGCTACACAGGAAAATGTGCTCGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGAGCATAAAATTTTATAGAGAGTGCCTTGGAATGAAGTTGCTCAGAAAGCGCGACATGCAAGAACAGAGATATACTAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTTGTTGCTGAACTGACATACAATTATGGGATTGATAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCCAAGGGAGGGAAAATTACTAGAGAGCCTAGTCCTGTCAAGGGAGGCAACTCAACAATTGCATATATTGAAGATCCTGATGGTTATCAATTTGAACTTTCCGAAAGGGTTTCCTCTCCTGAGCCTTTGAGCAAAGTAATGCTTCGAGTGGGTGATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAATCTAAGAGTACAATAGCAATACTGGGTTATGGTCCAGAGGAAAAAAACACTGTCCTGGAATTGACTTACAACTATGGAGTCACAGATTATGATAAAGGAGATGCTTATGCTCAGATTACAATAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATCAAACTTGCAGGAGGGAAGATTACTCGGGAACCTGGACCTGTACCTGGTATCAAAACGAAGATCACATTGTGTGTTGATCCTGATGGTTGGAAAACTGTTTTTGTAGATAATGTTGACTTTCGTAGGGAGTTGGAATAG 1041 0.4131 MASSIRPSLSSFMLPSLRSCNPSEKLSLFHLGSGIRLYHKFGLKSSRLLRHDDNKCMRVMASGNMSTAATQENVLDWVKHDKRRMLHVVYRVGDLDKSIKFYRECLGMKLLRKRDMQEQRYTNAFLGYGPEDAHFVAELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPSPVKGGNSTIAYIEDPDGYQFELSERVSSPEPLSKVMLRVGDLDRSIKFYEKAFGMELLRTQDDPESKSTIAILGYGPEEKNTVLELTYNYGVTDYDKGDAYAQITIGTDDVYKTAEAIKLAGGKITREPGPVPGIKTKITLCVDPDGWKTVFVDNVDFRRELE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1597 346 CDD GlxI_Ni 85 205 - -
Gso9g1597 346 TIGRFAM glyox_I: lactoylglutathione lyase 72 215 IPR004361 GO:0004462|GO:0046872
Gso9g1597 346 TIGRFAM glyox_I: lactoylglutathione lyase 215 341 IPR004361 GO:0004462|GO:0046872
Gso9g1597 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 214 338 IPR037523 -
Gso9g1597 346 PANTHER LACTOYLGLUTATHIONE LYASE 11 346 - -
Gso9g1597 346 Gene3D - 211 346 IPR029068 -
Gso9g1597 346 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 346 - -
Gso9g1597 346 ProSitePatterns Glyoxalase I signature 1. 87 108 IPR018146 GO:0004462|GO:0046872
Gso9g1597 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 84 208 IPR037523 -
Gso9g1597 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 84 209 IPR029068 -
Gso9g1597 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 85 205 IPR004360 -
Gso9g1597 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 217 332 IPR004360 -
Gso9g1597 346 Gene3D - 55 210 IPR029068 -
Gso9g1597 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 217 338 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1597 Gso-Chr9 40256545 40260272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1597 215 335 Calmodulin-binding Proteins AT1G08110 26.531 1.93e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1597 K01759 - gmx:100781439 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1944 5 42562740 42567948 Gso9g1597 9 40256545 40260272 PCT
Gso8g0301 8 2834931 2841284 Gso9g1597 9 40256545 40260272 PCT
Gso9g1597 9 40256545 40260272 Gso5g1944 5 42562740 42567948 PCT
Gso9g1597 9 40256545 40260272 Gso8g0301 8 2834931 2841284 PCT