Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1595 ATGGAGCGCATCATCGGCGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCCACTCATATTGATACCTTCGAGATCGTCGCCGTCAAGATTGAAAACGGTAAAACGAAGCATCCGCAATTGCTTTATGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGAATCCCGAGCATAAAATGGTGTGGTGTAGACGGGGAGGATAATGTGCTTGTTATGGACTTGCTGGGACCTAGTCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCTCTCAAATCCGTGTTGATGTTGGCTGATCAAATGATGACTAGAATAGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTATATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCACAACTAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGAACTGCACGCTATGCTAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGACAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTATTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCACTCTCTGACCTTTGATCAGAGACCTGATTATGGATTCTTGAAGCGCCTTTTTCGGGACCTATTTACTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATTTTAAAGTACAAGCAGGCACAAAAGAATAGAGTCCAGCCTCACATATCTACGGTCCCTGGAACAAGTAGCAGTCCTGCAATGCCAATGGATGTGGACAACCATCGAGGTATTAATGTTTATTCAGGGGATGTCTCAGCAGAACGTATTAAATCAGGCAATGTTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTTGGTAAAATTTTGGGCTCTGAAAAGCCTCTGGACAAGAATATTTTTGGTGAATCGAATATACCCTCTACCTCGTACTCTATTGCTGGTACCTCAAGAAGGAACACCATGAAGCCCGCCTTGTCCACTGAAGCTCCTAAACCTGGACATGGGCAAGGAAGTAATAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTGCAGCGCATATCTTCTGCCAAATGA 1299 0.4265 MERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKSVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGYEFDYVFDWTILKYKQAQKNRVQPHISTVPGTSSSPAMPMDVDNHRGINVYSGDVSAERIKSGNVTGSGVKIQFKSPVGKILGSEKPLDKNIFGESNIPSTSYSIAGTSRRNTMKPALSTEAPKPGHGQGSNKIGPSSSWISSVQRISSAK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1595 432 PANTHER CASEIN KINASE-RELATED 1 412 - -
Gso9g1595 432 MobiDBLite consensus disorder prediction 412 432 - -
Gso9g1595 432 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1595 432 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1595 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso9g1595 432 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 412 - -
Gso9g1595 432 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso9g1595 432 Gene3D Transferase(Phosphotransferase) domain 1 1 324 - -
Gso9g1595 432 MobiDBLite consensus disorder prediction 380 397 - -
Gso9g1595 432 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1595 432 MobiDBLite consensus disorder prediction 380 432 - -
Gso9g1595 432 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso9g1595 432 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1595 Gso-Chr9 40245580 40249585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1595 9 213 EF-hand Containing Proteins AT4G23650 29.858 6.72e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso9g1595 Pkinase 3.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1595 K08960 - gmx:100805890 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1945 5 42577677 42581702 Gso9g1595 9 40245580 40249585 PCT
Gso8g0303 8 2851561 2855567 Gso9g1595 9 40245580 40249585 PCT
Gso9g1595 9 40245580 40249585 Gso5g1945 5 42577677 42581702 PCT
Gso9g1595 9 40245580 40249585 Gso8g0303 8 2851561 2855567 PCT