Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1589 ATGTCTGTGTCATTGGAGCAAGAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGGTTGTTCTGAGAGGACTGGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTGCCAGGTTCTGAGTCACCAGAGAGAGAAGAGGGTGTGGAGGACAAGAATGTGCACCCTTTAGGCATGGTGAAGTGTTTGGTGTCAGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTTTCTGGGAATAGTGGATCTGAGGTGGGTTTGGGGAAAGATGGTGGCTTCTTCTCTCCAAGGGGTGTTGGTGTTAGTGTTAGTGCTGCCAAGGCTGAGTGTACCAACCAACAAACTTGTGTTGTAAAAGATAAAGTTCCTCAATCTCCAAAGCCGTTGAATGAGAAGAAGCCTCAGATATCTGCTCCTGCTGCAAAGGAACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGAAAGAACTCAATGGCCACTCAGCCACAAAAGAATGATGATAATGCAGAAGCCAAGTCGGTATGCCTTTATGTGAAGGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTTGACCTCAAAAACTTTGGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTGTGGTCGAGATAAGTTGACTGAAAATAGATTGATGGATCTCCTCCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACCGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 924 0.4632 MSVSLEQEGYVGLSEVPAMEGCSERTGGGLNLKATELRLGLPGSESPEREEGVEDKNVHPLGMVKCLVSGAKRGFSDTIDGGSGKWLLSGNSGSEVGLGKDGGFFSPRGVGVSVSAAKAECTNQQTCVVKDKVPQSPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDNAEAKSVCLYVKVSMDGAPYLRKVDLKNFGTYMELSSALEKMFSCFTISQCGSHGVCGRDKLTENRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1589 307 Pfam AUX/IAA family 35 298 IPR033389 -
Gso9g1589 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Gso9g1589 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 299 IPR003311 GO:0005634|GO:0006355
Gso9g1589 307 Gene3D - 181 300 - -
Gso9g1589 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 13 299 - -
Gso9g1589 307 SUPERFAMILY CAD & PB1 domains 185 288 - -
Gso9g1589 307 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1589 Gso-Chr9 40184456 40187981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1589 138 297 B3 DNA Binding Superfamily AT4G23980 25.625 1.40e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso9g1589 AUX_IAA 3.1e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1589 K14484 - gmx:100803754 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1950 5 42608448 42611446 Gso9g1589 9 40184456 40187981 PCT
Gso8g0309 8 2891192 2894181 Gso9g1589 9 40184456 40187981 PCT
Gso9g1589 9 40184456 40187981 Gso5g1950 5 42608448 42611446 PCT
Gso9g1589 9 40184456 40187981 Gso8g0309 8 2891192 2894181 PCT