Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1584 ATGGATCCTCCACCCAAGACTTGGAGCATCCACATGCGCTCCGAGATAACCGCCAAGTACGAGGTTCTCAACCGGGTCGGGTCGGGCGCCTATGCCGACGTCTACCGCGCCATCCGCCTCTCCGACGGCGCCTCGGTGGCGCTGAAGGAGGTCCACGATTCCCAATCCGCATCGCGCGAAATCGAGGCCCTGAGGCTTCTGAAAGGGTCCCGAAACGTGGTCGTGCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTTGTGCTCGAGTTTCTCGGAACCGACCTTGCGGCGGTGATCGGAGAAGGTGATGGTGTCGGTGTTGGAGAAATTAAGGGGTGGATGGTGCAGGCTCTGAGTGCAGTGGATGAGTGTCATAGGAACATGATCGTGCATAGGGATTTGAAGCCGTCGAATTTCTTGGTTTCTGATGATGGGGTCCTCAAGTTAGGGGATTTTGGACAGGCAAGGATACTAGTGGAGTCTGGATTTAATGCTCCCCAGGAGAACCCGCCACCATATGAAGATGATACTTCTAATGCTGAAAGCTCAACCCAACATTCTGAATCTATTTCTCAATTAGTTAACTTAAACCAAACTGCATATGAAAATCCAAATCTGGGAACCTTGAGTCATGAAGAATATTTCAGAGTCTTGGATGAGATGAAAACCAAGAGCTACTCGTATGACACTGATAAGGACACAAACATCTATGATGGAAACACCTCATGTCTTGCAACATGCACAACCAGCGACATAGATGATGATCTTTGTAAGGGTTCTTTTACATATGAAGCTGAGGAGGTAGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTCGGTGGTTCCAAGCTCCTGAACTACTCTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTCTTTGCCGAGCTCTTAACATTGAAGCCATTGTTTCCTGGGACAAGTGATGTAGATCAGCTCAGCAGAATTGTAAGTGTTTTGGGGAACATTGATGAGGAAACTTGGCCTGGTTGTCACAAACTTCCTGATTATGGATCAATCTCATTTGGTGAGGTGGAAAATCCTAGTGGTCTTGAAGCATGCATGCCAAATTGCACCCCTGATGAAGTTTCCCTAGTCAAAAGACTGATTTTTTATGATCCTGCTAAGAGGGCCACAGCAATGGAGTTACTTCAGGACAAGTACTTTAGTGAAGAACCTCTTCCTGTTCCAATTTCTGAATACAATGAAGTGGATTCTGATTCTGCTTTGGAGGAGTTTGGCACCTTGAATATCACCACAACTGGTTCTGATTTATCTATACAGATCCCTTGA 1350 0.4741 MDPPPKTWSIHMRSEITAKYEVLNRVGSGAYADVYRAIRLSDGASVALKEVHDSQSASREIEALRLLKGSRNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGEGDGVGVGEIKGWMVQALSAVDECHRNMIVHRDLKPSNFLVSDDGVLKLGDFGQARILVESGFNAPQENPPPYEDDTSNAESSTQHSESISQLVNLNQTAYENPNLGTLSHEEYFRVLDEMKTKSYSYDTDKDTNIYDGNTSCLATCTTSDIDDDLCKGSFTYEAEEVGGNELGCLTSCVGTRWFQAPELLYGSTDYGLEVDLWSLGCVFAELLTLKPLFPGTSDVDQLSRIVSVLGNIDEETWPGCHKLPDYGSISFGEVENPSGLEACMPNCTPDEVSLVKRLIFYDPAKRATAMELLQDKYFSEEPLPVPISEYNEVDSDSALEEFGTLNITTTGSDLSIQIP* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1584 449 MobiDBLite consensus disorder prediction 174 192 - -
Gso9g1584 449 SUPERFAMILY Protein kinase-like (PK-like) 4 418 IPR011009 -
Gso9g1584 449 PANTHER CYCLIN-DEPENDENT KINASE 10 14 416 - -
Gso9g1584 449 PANTHER CELL DIVISION PROTEIN KINASE 14 416 - -
Gso9g1584 449 SMART serkin_6 20 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1584 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gso9g1584 449 MobiDBLite consensus disorder prediction 166 192 - -
Gso9g1584 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gso9g1584 449 Pfam Protein kinase domain 279 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1584 449 Pfam Protein kinase domain 20 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1584 449 Gene3D Transferase(Phosphotransferase) domain 1 106 414 - -
Gso9g1584 449 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Gso9g1584 449 ProSiteProfiles Protein kinase domain profile. 20 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1584 Gso-Chr9 40146503 40148375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1584 1 449 Core Cell Cycle Gene Families AT4G28980 57.917 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gso9g1584 Pkinase 1.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1584 - - gmx:100802698 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0726 7 7887661 7890643 Gso9g1584 9 40146503 40148375 GST
Gso5g1956 5 42693102 42694931 Gso9g1584 9 40146503 40148375 PCT
Gso8g0314 8 2968492 2972139 Gso9g1584 9 40146503 40148375 PCT
Gso9g1584 9 40146503 40148375 Gso5g1956 5 42693102 42694931 PCT
Gso9g1584 9 40146503 40148375 Gso8g0314 8 2968492 2972139 PCT