Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1565 ATGATGGAACACAACATCATCGTTAACAACAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTGAACGATCCCACCACCGATAAACTCATCATGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGACCCCCTCGACTTCTCTCACTCCCTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGACAACTCAACACTTATGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCAAATGAGTGGTTCCTGCGAGGACAGAAGCACTTGTTGAGAAACATCGCGCGGAGGAAGCACGGTGGAGCTGGGAGGAGCAATTTCAATTTGCATTCGCATCATCATCCGTTGAAGGTGGAGGAATTGGACGACGAAGCCATGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAAAAAGCGTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACAGAAAAACGACCACAACAAATGATGGCTTTTCTGTCCAAGGTTGTCGAGGACCCGCAGGTTCTTTCTCGGATTCTCCGAGAAAGAGAAAAGAAACACCTGGGCGAGAAAAAGCGCCGCCTAATTCCGCCGCCAACAACGACGGCAGCGACGACGTCGTCGTCGTCGTCCTCCGGCATCAAGACGGAGTTCGAAGAAGACGAAGGTAATTATAATATCATGTCTTCGTCGCCGGAGACAGGGTTGGAAATCGATAATAATAATATTTGTTCGCCTCTGGCGGCGGGGTATTGGGGGGAACAGGGTTGTCATGGGTACAATCGTGGCGCCGTGACGGCGCCGTTGACGGTGGTGGCGCCGGCGGTTCCGACGATGGGAGGAGGGTATTTGGGGCGTGGGGTTTTTTTTGGGGAAATGGCGGCGGAGGGGAATGCGGTGCCGCCTTATCCGTTTTCGTTGTTGGAAGGTGGCTTTTAG 963 0.5202 MMEHNIIVNNNNVIAPFVIKTYNMVNDPTTDKLIMWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIARRKHGGAGRSNFNLHSHHHPLKVEELDDEAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREKKHLGEKKRRLIPPPTTTAATTSSSSSSGIKTEFEEDEGNYNIMSSSPETGLEIDNNNICSPLAAGYWGEQGCHGYNRGAVTAPLTVVAPAVPTMGGGYLGRGVFFGEMAAEGNAVPPYPFSLLEGGF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1565 320 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 Coils Coil 132 166 - -
Gso9g1565 320 MobiDBLite consensus disorder prediction 207 222 - -
Gso9g1565 320 Gene3D - 9 107 IPR036388 -
Gso9g1565 320 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 15 313 - -
Gso9g1565 320 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1565 320 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 313 IPR027725 -
Gso9g1565 320 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Gso9g1565 320 MobiDBLite consensus disorder prediction 191 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1565 Gso-Chr9 39941644 39943563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1565 13 320 HSF AT3G24520 44.767 3.47e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso9g1565 HSF_DNA-bind 6.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1565 K09419 - gmx:100794896 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0746 7 8114924 8116862 Gso9g1565 9 39941644 39943563 GST