Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1547 ATGGCGAGTCCCATGAAGGAAGATGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACATAATCGCAGATGCGTTAACTGCAACAGTCTGGGGCCACAATATGTGTGCATAAATTTCTGGACGTTTGTTTGCACGAACTGCAGTGGAATACACCGGGAATTCACTCATCGAGTAAAATCAGTTTCAATGGCTAAGTTTACTTCACAAGAAGTTAGTGCCCTTCAAGAAGGAGGGAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACTACGTCATTCTTTCCCTGATAGCAGTAATGTTGACAGGCTCCGAAACTTTATTAAACATGTTTATGTGGATAGAAGATTCACTGGAGACAAGACCAACGACAAACCACAAAGAGGCAAGCCGGGTGACAAAGATGATTTTTATCAAGGAGGATCTATAAGTCCTCATTATGAGGACACATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGAATATGATAAAGACAGTAGGCAATATGGTGATCATAAGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGAACGTAGATTATCAGATGGAGATTATAAGTTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATGTGGATACTTCAAGCCCACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTGCCTCTTCGGATAAGTGAACCACCCAAAACAAACAGTGGAAGACCTGCTGATAGGTCAGCACCAACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCTGGCAATGAAAACCCATTAGATGTAAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCAGTAGCTCCATCAATTCCTCAAGCCCAACAAACTACTGTGCTTCAACCTGTTGTGCAGCCAGCAAACTCTAGTAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGCAACAAAAGCAACTCCAAGCTCCTCAAATTTAAGTCCACTTGAATCAATGTTGTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCAAGTTTCTGGAGTCCAAGGACCTATTCCAGCATCATCTCTTACTTCTACTTCTGGAGCTGCAAGTGTTAGCGGTTTCTCAGCTTTCCCACCCAGCAATGCTTCAGTACCGTCTCCTGGATTGACATCAGTGTCACCTCTTAATAATGCAGGACAGTGGGCCAATTTGCAACAGCAGCAACCATTTTTCCCTGTTGCTGTTAGTCAGTCTAGTACACAACAATTTATACCACCATTAGGTGGAACAGCAAATAATCAGCCATGGAATGTACCTTCTGCACCCACAGTGCAAGGGCATCCAAGCACACCAATGCCACATACATACCCTCATGCCTCAAAGCCTGCCAATGAGACTATATCCGGTGTTGTTTCACAACCTCCTGTTGCAGAAGTTAGAGCAAGTGGAAGGAAAGAACTTCCCGAGGATCTGTTCACTGTAAAATATTCTTCCTTCCCTGCTCCAGTCCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATACAATAATGTGCCTGTGCCAAGTTTTCCACAGCCATCAAAGTCAACAAATCCGTTTGATGTCAGCAGTGAACCAACTGCAAATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCACCTGCTGGTGCAGTGCACCCTTCAAGCATGGGTAATCCAACACATGGCTGGACTCCTCCCCCAGCATCATCATTTCTGCCTGCACAAGCACAAATGCATGCAACTGCATTGGGACCGAGGGCATATATGGAGCAACAAATTCCGACTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTAACCAAGGAGCTGTTTTTGGCTTGTCAAATCCAAATCAGCAGCTGATCGGTAGGTTATCAAACACTCCCACCTCTAACTCATTTCCTACAGGAGGGAACCCATTCGGATAA 2043 0.4498 MASPMKEDEKNERVIRGLLKLQHNRRCVNCNSLGPQYVCINFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQRAKEIYFKEWDALRHSFPDSSNVDRLRNFIKHVYVDRRFTGDKTNDKPQRGKPGDKDDFYQGGSISPHYEDTYERRYSDRSSPGGRSPEYDKDSRQYGDHKRSPGRPPIINDWRREERRLSDGDYKLESQSPERAKDVDTSSPPVVRPVRDILGENVVPLRISEPPKTNSGRPADRSAPTQRTASSSSLASGNENPLDVKLETTKSLIDFDADPEPPVAPSIPQAQQTTVLQPVVQPANSSNDNWASFDVAPATKATPSSSNLSPLESMLSQLSVPASLPAQVSGVQGPIPASSLTSTSGAASVSGFSAFPPSNASVPSPGLTSVSPLNNAGQWANLQQQQPFFPVAVSQSSTQQFIPPLGGTANNQPWNVPSAPTVQGHPSTPMPHTYPHASKPANETISGVVSQPPVAEVRASGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNVPVPSFPQPSKSTNPFDVSSEPTANQAPTFPSMSSLQGALPSVPPAGAVHPSSMGNPTHGWTPPPASSFLPAQAQMHATALGPRAYMEQQIPTNMPMPRQEVGNFGNQGAVFGLSNPNQQLIGRLSNTPTSNSFPTGGNPFG* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1547 680 CDD ArfGap_AGFG 12 122 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 543 604 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 543 577 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 661 680 - -
Gso9g1547 680 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Gso9g1547 680 PANTHER ARFGAP/RECO-RELATED 1 680 IPR044820 GO:0005096
Gso9g1547 680 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Gso9g1547 680 PANTHER ARF GTPASE ACTIVATOR 1 680 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 152 218 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 256 280 - -
Gso9g1547 680 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Gso9g1547 680 MobiDBLite consensus disorder prediction 123 280 - -
Gso9g1547 680 MobiDBLite consensus disorder prediction 123 140 - -
Gso9g1547 680 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gso9g1547 680 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gso9g1547 680 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gso9g1547 680 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gso9g1547 680 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1547 Gso-Chr9 39721282 39729672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1547 12 156 C2H2 Transcription Factor Family AT4G05330 31.333 1.73e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1547 - - gmx:100817254 1375.92