Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1544 ATGGCTGAAACTAAGTCAACCAGTAAGATTGTCAAGAAACAGGACTCGAAAAAAGTTTCTGGTCTCACCAATCAGCCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCGGTGCGGTTCGTACCAGCTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCCTGCCGAGCTGTTCTCTCTAAAGATGACACTTTTTGTAGAAGGTGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATGTGAATCTTCTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTAGGAGTTGTTGATCATGGACAACTGATGCAACTTGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCCCGGCGTGTAGATGTACTATGTTACAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAAATATAAAGAATTACATGAAATGGTAAAAGAGGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAATGGTTGGCCACTGTTCCCAATGTACATCCAGAATCCAGAGAGGGTTCACTTCCTGCTGCATGCAAGGTTGTGTTTGAAGAGGTAACAGCTTTCTCAGTCAAAATCATTTTAATTGAAATGTCAAATGCATCATCTTCTGTGGACATTAAGGGATACAAGCTCTGGTATTACAAAAGTAGGGAGGAGTCACACACTAAAGATCCCGTTTCTGTGTTTCCCAAAGCTCAGAGAAGGATTTTGATATCCAACCTCCAGCCTTGCACAGAATATACATTTCGGATTGTATCTTTTACAGATACGAGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAGAATTCATCTTCATCAGTTGCCATGAATAAAAAAAAGGAGAACCTTCAAACTGAATGCAATTCTTCTGGCTCCGAAATGGAGCCCAATCCCACAATGGAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTTTCTTGGGCTCAAGAACAAGGCTGCTTTGAGGAGTTTTGCTGCGCTGACAAGAGAAATTGCTGTGGGAAAAGTGAAACAATCAAGCCTACCAATCTACAAGAGCAGTTGCCTTCAGTTTCACGCGACCTTGATCTAAATGTTGTTTCGGTGCCTGATTTAAATGAAGAGCTTACACCTCTGTTCGAGTCTTCTAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATTTAGAGAAAAATTTAGCAATATCACACGGTAGTGGTGGTTCCCAAACTTGGAACCATGGACCAACCGGAGAAGTTCCAGCAGTTGACTCTCGCGGAGATGCATGTAGGAAAAGGATGGCAAGCACCAATGAAGAGACACATGATTGCGACAGCACCTTGATAAATGATTCTCCTTTACGCGCATCTGATGGTCCATTCTCCTTAGACGAGAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAGTTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAACAAGAACGTAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGCTCTCTTCCAATAAGGCTGTGTCATCAAGTTAA 1956 0.4259 MAETKSTSKIVKKQDSKKVSGLTNQPSRKQHRKGENPVRFVPAPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKYKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVHPESREGSLPAACKVVFEEVTAFSVKIILIEMSNASSSVDIKGYKLWYYKSREESHTKDPVSVFPKAQRRILISNLQPCTEYTFRIVSFTDTSDLGHSEAKCFTKSIEILEKNSSSSVAMNKKKENLQTECNSSGSEMEPNPTMEDSGFKVRDLGKILHLSWAQEQGCFEEFCCADKRNCCGKSETIKPTNLQEQLPSVSRDLDLNVVSVPDLNEELTPLFESSRDEDNGCTLQQAVEADDDAASHDLEKNLAISHGSGGSQTWNHGPTGEVPAVDSRGDACRKRMASTNEETHDCDSTLINDSPLRASDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGLSSNKAVSSS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1544 651 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 645 IPR044514 GO:0010048|GO:0040029
Gso9g1544 651 MobiDBLite consensus disorder prediction 503 526 - -
Gso9g1544 651 SUPERFAMILY Fibronectin type III 263 340 IPR036116 GO:0005515
Gso9g1544 651 MobiDBLite consensus disorder prediction 1 16 - -
Gso9g1544 651 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Gso9g1544 651 Gene3D Immunoglobulins 251 352 IPR013783 -
Gso9g1544 651 ProSiteProfiles Fibronectin type-III domain profile. 259 357 IPR003961 GO:0005515
Gso9g1544 651 PANTHER VIN3-LIKE PROTEIN 1 4 645 - -
Gso9g1544 651 CDD FN3 288 339 IPR003961 GO:0005515
Gso9g1544 651 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1544 Gso-Chr9 39689430 39697872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1544 54 642 PHD Gene Family AT3G24440 49.091 2.35e-180 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1544 - - gmx:100816714 1333.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0767 7 8408198 8416686 Gso9g1544 9 39689430 39697872 GST
Gso5g1978 5 42905949 42917551 Gso9g1544 9 39689430 39697872 PCT
Gso8g0336 8 3159265 3169097 Gso9g1544 9 39689430 39697872 PCT
Gso9g1544 9 39689430 39697872 Gso5g1978 5 42905949 42917551 PCT
Gso9g1544 9 39689430 39697872 Gso8g0336 8 3159265 3169097 PCT