Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1505 ATGGCTGAATTCACAGAAAATATGCAATTGCAAAGCAATATTATTAGACCCTCCCAGTTTCCATTCTTAGAGATTGATCCAAGCATGGAACTCCTAAACCAGTTCATAGGGATGAACCAACATGTCCTAGAAAACTCAAACTTGAGTACTATGCACAACTTGGTGCCTTTCTCCTGTGACACTTTCTTGGGCCCTCAAGAGCCTGAGTTTCCAGGAAACTTGGAAGAAAATTTCCCTGCCCTTGTCAACCACAATGCACTTCCTGTTTCCCTCCCAATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAAAAAAAGGAAATCAGTGGATCTTCCTGAGACAAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATCAAACATAGTTCTGGAAGAGGGAAGAGAGTAAAAAGCAATGTAACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAACATTGTTCCAGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCTTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACATTTTATGACTTCAACTCCGAGACAGATGCTTTGGAAACAATGCAGAGAGCAAGGGCATCCGAGGCAAAAGAGCTAGGAAAGTATAAGAAAGAAGGGTATGGAGGAGTTTCTTTCTTTCAACCAGCATGGCCCCTTTGA 822 0.4185 MAEFTENMQLQSNIIRPSQFPFLEIDPSMELLNQFIGMNQHVLENSNLSTMHNLVPFSCDTFLGPQEPEFPGNLEENFPALVNHNALPVSLPIFQAENEIHEGKKRKSVDLPETSSANSTPAVSESGSKIKHSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYKKEGYGGVSFFQPAWPL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1505 273 Gene3D - 162 224 IPR036638 GO:0046983
Gso9g1505 273 MobiDBLite consensus disorder prediction 139 168 - -
Gso9g1505 273 SMART finulus 168 218 IPR011598 GO:0046983
Gso9g1505 273 CDD bHLH_AtBPE_like 152 237 - -
Gso9g1505 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Gso9g1505 273 Coils Coil 239 259 - -
Gso9g1505 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Gso9g1505 273 MobiDBLite consensus disorder prediction 103 168 - -
Gso9g1505 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Gso9g1505 273 MobiDBLite consensus disorder prediction 112 130 - -
Gso9g1505 273 PANTHER TRANSCRIPTION FACTOR BEE 1 2 272 - -
Gso9g1505 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 272 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1505 Gso-Chr9 39311868 39313794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1505 70 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.617 1.22e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g1505 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1505 - - gmx:100806942 537.724