Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1498 ATGGCGACGCCGCTGACGGGACTGAACGGCGGCGGCGGCGGAGTGGCGGTGCTGACGAATCCGGTGAACAAGGTGGATTCCTCCGCCAATGGCGGTGGCGGATTCGGCCGGTCGCTGTCGGAGTCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGATTGGCGATGGCGTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCGTTTCCTCAGATCGATGTATAGCCACCACTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTAGATATGCGTGTGAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGATCTTTTTGATCATCTATTTGAGCTGTTAAACTCTTCTATCCATAATGATGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACGTCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCGGTTTCTCTGCAGTATTCCTGTGAATATGATGACAGAATTTCTTCCATGGCTTTCATCATCTATATCACCTGATGAATCTCAGGATTTGCAGAAGTGCTTAAGCAAGATAGTGCCGGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTTTAGATCATTCTCAGGTGCGATGTAGTCCTAATCCTTTAACCCATCAGAATGGGAAAATAAAATGTGCATGTGAGTCCACAGCAACTGGGAAAAGGAAATATTCTGGATCTAGCATAGATGTTTCTGATACCATGAGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGCACAGTCTAGAAAGATACAACTCTCTGGAGATTTCACTAACCTGTCAGCTTTCAATGAAAGGTTGCAGTTCATTGCTGAAGTTTGCATATTTCACAGTATTGCAGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAGTTTTCTTTCTATCAAGAACATGCTGAAGAAGAAAGCCAATTTAATGAGTTCCGGTCTTTGATTGAAAGTATTCAAAGTGAAGAAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGACCATATATTGGAAATGATACAGAGACATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGATTCGATCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTAGCAGCTCCAGCAATAGATTCTGCTTTAGTCACACTTTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCTTCAAGTGTATCAGGTTGCTGTCCGGCCCAGCGATTTACCGATATTGAAGAAAATACTGTTCAATCTTCCTGTACTTCTGCTTCTGCATTGTCTGGTAGAGTTTGCTCGGTATTAGCTGAATCAGATGGGACCCAACAAAGATCAGTCAAGCGAAACATATCAGAGGTGCACAAGAATGAAGATGTCTCTAAAACTTCAGAAATTGAAAGTATTCAGAAACAATGTTGTAGTGCCCGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAACAAGAATAATTTGGGGCTGGGTTCACTCTCTACAACCAAGTCCTTACGCTCTTTGTCTTTCACTGCTTCTGCCCCATCCCTTAATTCTAGTCTTTTCATATGGGAAACAGACAACAGTTCATGTGATGTTGGCTCTACAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGCTTATATAGAGCTCATAGTAATGCTGAAGACGATATAGTATTTCCTGCCCTCGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTACACGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCATGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAAACATGCAAATGACCCATATGTCAGTGGATTTAAGTGAAAATGATTTTGGAATTTCTGATGCCAATGATAATATCAAAGAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTGACCCTGGATCAACATATTTTTAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACACAGGATGAACAGAGCAAAATGATGGATACATGGAAACAGGCAACTAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAACTCCTGTATCTACATCACAGACAGAAGCGTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAAGAAAACTTGAACCTGAATGAGCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGTATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGCGACTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCCGCCCAACAGAAGTTACCTAAGGCTCTATCTGGGGAGTCTAGCAAACAAATAGAAGGATGCTCACCATCATTTCGAGACCCAGAGAAAGAAATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCAGTGCCTAACTATACAGCCAGTTGGGCCTATATGCATGTCACCTTCATGTAATGGACTTACAATGGCAAAGTATTATTGCAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTATATTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGCGACGACCTGTTCACATCAAGTGCAACAGTGAGAGCTTTACCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCGTACACTTGTAGCCACTACACATGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGATCGCTATCAGGATATACTCTGCCATGACTGTGATAGAAAGGGCACTTCACGCTTTCACTGGCTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGTGTAATCAAGAGTGAGGCAACAAATTCTAGCTGCCTTTAG 3717 0.4208 MATPLTGLNGGGGGVAVLTNPVNKVDSSANGGGGFGRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYRFLRSMYSHHSNAEDEVIFPALDMRVKNVAQTYSLEHQGESDLFDHLFELLNSSIHNDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWRFLCSIPVNMMTEFLPWLSSSISPDESQDLQKCLSKIVPEEKLLQKVIFTWMEGRSSANTVENCLDHSQVRCSPNPLTHQNGKIKCACESTATGKRKYSGSSIDVSDTMRTHPIDEILLWHNAIKKELNEIAAQSRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFYQEHAEEESQFNEFRSLIESIQSEEATSSSETEFYSTLCSHADHILEMIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLIRSLTEDEAQMFLKNMQLAAPAIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRFTDIEENTVQSSCTSASALSGRVCSVLAESDGTQQRSVKRNISEVHKNEDVSKTSEIESIQKQCCSARSCCVPALGVNKNNLGLGSLSTTKSLRSLSFTASAPSLNSSLFIWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHENMQMTHMSVDLSENDFGISDANDNIKEYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQSKMMDTWKQATKNTMFNEWLNECLKETPVSTSQTEASERSTSQRGGDYQENLNLNEQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKALSGESSKQIEGCSPSFRDPEKEIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMQCLTIQPVGPICMSPSCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYIHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGSCGSYNTRVIKSEATNSSCL* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1498 1238 SMART ring_2 1122 1163 IPR001841 -
Gso9g1498 1238 Coils Coil 769 789 - -
Gso9g1498 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1166 IPR013083 -
Gso9g1498 1238 CDD RING-H2_Pirh2 1121 1164 - -
Gso9g1498 1238 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1238 - -
Gso9g1498 1238 Pfam CHY zinc finger 993 1068 IPR008913 GO:0008270
Gso9g1498 1238 SUPERFAMILY RING/U-box 1119 1174 - -
Gso9g1498 1238 CDD Hr-like 46 172 - -
Gso9g1498 1238 Pfam Hemerythrin HHE cation binding domain 650 811 IPR012312 -
Gso9g1498 1238 Pfam Hemerythrin HHE cation binding domain 300 434 IPR012312 -
Gso9g1498 1238 Pfam Hemerythrin HHE cation binding domain 51 174 IPR012312 -
Gso9g1498 1238 SUPERFAMILY CHY zinc finger-like 986 1050 IPR037274 GO:0008270
Gso9g1498 1238 Pfam Ring finger domain 1121 1163 IPR001841 -
Gso9g1498 1238 Gene3D - 1193 1234 - -
Gso9g1498 1238 Gene3D nmb1532 protein domain like 302 450 - -
Gso9g1498 1238 Gene3D nmb1532 protein domain like 42 192 - -
Gso9g1498 1238 CDD Hr-like 303 432 - -
Gso9g1498 1238 SUPERFAMILY Zinc hairpin stack 1059 1115 IPR037275 -
Gso9g1498 1238 CDD Hr-like 652 810 - -
Gso9g1498 1238 ProSiteProfiles Zinc finger RING-type profile. 1122 1164 IPR001841 -
Gso9g1498 1238 ProSiteProfiles Zinc finger CTCHY-type profile. 1058 1121 IPR017921 -
Gso9g1498 1238 ProSiteProfiles Zinc finger CHY-type profile. 986 1055 IPR008913 GO:0008270
Gso9g1498 1238 PANTHER CHY ZINC FINGER PROTEIN 24 1238 - -
Gso9g1498 1238 Pfam Zinc-ribbon 1169 1226 IPR039512 -
Gso9g1498 1238 MobiDBLite consensus disorder prediction 880 903 - -
Gso9g1498 1238 Gene3D nmb1532 protein domain like 646 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1498 Gso-Chr9 39230431 39242119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1498 1 1237 C2H2 Transcription Factor Family AT3G18290 66.878 0.0 1702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1498 K16276 - gmx:100776832 2472.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0804 7 8832699 8842725 Gso9g1498 9 39230431 39242119 GST