Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1464 ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATCGATACCCAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTACTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACAGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTGGTGATATAAAATCTTACCTTCAGATGACATTAAAGGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCGGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGCTCTTTATTTCCTATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACTTATGATCCGAAGGCTAGAATTTCTGTACAGCAAGCACTAGAGCACAGGTACTTCTCATCTGCACCTCTGCTCACAGATCCTGTTAAACTTCCAAGACCCGCTCCTAAGAAGGAATCTAAGGTTTCAGATGTAATTTCAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGCAATTCTTTGCAAGGAGATAAGTTCGATGACAGTGTTGTTAGTGTCAGACAGGCAGCTGGTGATAATACGGGCAAGAATGAGCCAGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTATGATTACCAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCTAG 1236 0.428 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSASQWPDMIFLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLLTDPVKLPRPAPKKESKVSDVISNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVVSVRQAAGDNTGKNEPAPMSLDFSLFGLKPPNRPMITSADRSHLKRKLDLEF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1464 411 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gso9g1464 411 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Gso9g1464 411 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1464 411 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1464 411 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1464 411 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Gso9g1464 411 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Gso9g1464 411 MobiDBLite consensus disorder prediction 392 411 - -
Gso9g1464 411 MobiDBLite consensus disorder prediction 304 357 - -
Gso9g1464 411 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Gso9g1464 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gso9g1464 411 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gso9g1464 411 SUPERFAMILY Protein kinase-like (PK-like) 9 299 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1464 Gso-Chr9 38791866 38797097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1464 8 411 Core Cell Cycle Gene Families AT1G73690 76.980 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gso9g1464 Pkinase 7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1464 K02202 - gmx:100814263 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0848 7 9594491 9600021 Gso9g1464 9 38791866 38797097 GST
Gso5g2072 5 43710230 43715907 Gso9g1464 9 38791866 38797097 PCT
Gso9g1464 9 38791866 38797097 Gso5g2072 5 43710230 43715907 PCT