Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1460 ATGACTCCTCGCGTCGACGATTTCGAAAAGGACAATCTCTCCGCCTCCGACGACGACGATGACGATGATGACGACGGCCTCAAGGAGGACATGGCCGCGCTCGCCCGAGCCTGCACGATCGCCGTCCCGTGCCCCGACGATAATTCCACCGCCGAAGACGATGTTCCGGCGGAGGACCCGCTCCTCCACGCCGGAGACTCGATCGTTCCCGCCGCCACCGACTCCGACGACGACCAGGACGACCTCGAGTGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCTCTGTCCGTTCTTCCGCCGCTGACGCCGCCGGCTGCCGTGTCGGACGACGACGACGACGGCGTGGACGACCTCGAGACGGTGCGCGCGATTATGAAAAGGTTTAGTACCTACGGCGAAGGTTCTCATGAAGGTGGAATGCAAATGTTGGTTGAGGGGGATCAGACCTCCAGCCCAGGGTATGAGGGTGACATTGCTAACGGCTCAATCCATTACGAATCATATGCTGGTGAATTATGTCCTGTTTCTCAAGATCCCAACGAGGCTGCCACCGAGGAGTTGATTGAGAACGTTGAAATGAAGCTTAGTGATTTTGTTGAGAGTTCTGAACCTGATGCCTATGAGTCATCCAAATTACCACAGAAAAGATTGAGCTATCCTCCTGTAGTTCGGTGTTTTGTTGATGCCATTAATAAAAATAGGGATTTGCAGAGATTTATTAGAAGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAACAAAATTAAAATTCTCAAGGACTTCCAGGCTTCATGCACTAGAAGAACAGGGAATGCGTTATCAATGAAAAAAGATCCACGTGTTCAGTTAATATCTTCAAAAAAGCCATTTGCTCCAAAGAACTCTAAGAAACATAAAAAAGCCTCTGCAATGTGTTATGGCCCGGAAGAGAATTCTCATGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGGAAAAAATGGTCTAGTGTAGAAAGGGAAAGTCTTTTGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTTTCACTTTCAGTTGATAGTTCAGAGGGCTTGCTTGGAGATGCAAATGACATGGATAATGTAATTGCATCTGTGAAAGATCTTGAAATCACACCAGAGAGGATTAGACAATTTTTACCTAAAGTTAATTGGGATCTCATAGCTTCAATGTATGTTGGTGGCCGTAATGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCAAGGTGCATGGACAAATGAAGAGGACAAGTCTCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTTGATATTGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATCCTGCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATTCTCAACTCTGTTCTGCTGTGGCATGTTTTGGTGCTAGGGATTGGCAATCCGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCTATTTGTCCTGAGAAGAAAGGGAGCTTTACACAAGAGGAGGATATACGCTTAACAGTAGCAGTTATGCTTTTTGGACGGAAATGGAACCAGATAGCTAACTATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGTCAAGCATGGATACTGCTGGTCTAAGATTGCTGAAGAAGTGCCACCTCGTACTGATTCTCAATGCCGGAAGAGATGGAAGGTGTTATGTCCTGAATGTGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCGAAGGTCTATTATTGGTAGTAACTTCGTTGACCGAGAATCTGAACGCCCAGCCATTACACTGAATGATTTTCTACCTTCACCCGCGTTAGCTCCAAAATCTGATGTTGGTGCTTCAAATCTCTGCAAGAAGCGCAAGTCAAGCAATGTTCCCAAGGAAACGAGTAAGAAATGCATAAAAAGAACTCGACTTCGTACCAAGGAAGTACAAGATACAGAGGTATATAGTGATGATGGGATCAAGACTTGTGGTGAAGTCGTCTCTGCATGCAGAAATGTTTCCAAGAAGATGAGGTCCAAAAGACATACAAAAAACACCCAAAATTGTCCCAAGGAGGTAGTGGATATATCTTGTAGTGACAAGGTCAAGACTTGTATTGAGAGTTCAGAAAGTCAATCTACCTTTATTGCAAGTTCTGGAAATCAAGATTCAGACAACATAACTATTGTATGCTTTTTACGCGATAAATCAAAGGAGATGCTATCTAGATTTACCAAAGACTTGTGTCAGGCTTCCTTCTCCGCCAGGATTACAGATGTTTCTAGGCAGGTTGAAAGTCAAGACCCATTTGATGATCAAATCATCAGCTTGTCTCAGTCATGTGATACTGTTGGAACTAAAAATTTGTTCGTGCAGCAGAATGCTGCTTCTGATACACTAGTGGGAACACCAGAGGATGCGAACACTTTGACAGGCAATGATGATGATATGACCCTTGCGTGTTTTCTGGGAAACAAACCAAAGAAAGGGAGTCAAGCTGCTAACAGGCGTAGTGCATGCTCTTCAACCATCATCATACCCGATGGCAGTGGACTGTCAAGGTCAAAGCATGTTGAAGAGGAGACTGTTTTGCATGGTGGTGTTGCTGAGCCAATGGACATCGTTGTGGAAAAAAAGGATGATGAGCTTCTTACTTCCTTGCAAAACAGGCCAACAAGGCAGCGAAAACGACCCAGTAGGTTTTTATGA 2913 0.4459 MTPRVDDFEKDNLSASDDDDDDDDDGLKEDMAALARACTIAVPCPDDNSTAEDDVPAEDPLLHAGDSIVPAATDSDDDQDDLECLKRVQSLYQPLSVLPPLTPPAAVSDDDDDGVDDLETVRAIMKRFSTYGEGSHEGGMQMLVEGDQTSSPGYEGDIANGSIHYESYAGELCPVSQDPNEAATEELIENVEMKLSDFVESSEPDAYESSKLPQKRLSYPPVVRCFVDAINKNRDLQRFIRSKLIELEAKIEENKKIRNKIKILKDFQASCTRRTGNALSMKKDPRVQLISSKKPFAPKNSKKHKKASAMCYGPEENSHVANYRMVLERFPLSLDRKKWSSVERESLLKGIKQQFQEMVLQLSLSVDSSEGLLGDANDMDNVIASVKDLEITPERIRQFLPKVNWDLIASMYVGGRNGAECESRWLNCEDPLINQGAWTNEEDKSLLLIVQDMGIRNWFDIAASLGTSRTPFQCLARFQRSLNPAMLNSEWTEEEDSQLCSAVACFGARDWQSVASVLERRTGTQCSNRWKKSICPEKKGSFTQEEDIRLTVAVMLFGRKWNQIANYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIVKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPECVPLLQEARKKRRSIIGSNFVDRESERPAITLNDFLPSPALAPKSDVGASNLCKKRKSSNVPKETSKKCIKRTRLRTKEVQDTEVYSDDGIKTCGEVVSACRNVSKKMRSKRHTKNTQNCPKEVVDISCSDKVKTCIESSESQSTFIASSGNQDSDNITIVCFLRDKSKEMLSRFTKDLCQASFSARITDVSRQVESQDPFDDQIISLSQSCDTVGTKNLFVQQNAASDTLVGTPEDANTLTGNDDDMTLACFLGNKPKKGSQAANRRSACSSTIIIPDGSGLSRSKHVEEETVLHGGVAEPMDIVVEKKDDELLTSLQNRPTRQRKRPSRFL* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1460 970 MobiDBLite consensus disorder prediction 12 28 - -
Gso9g1460 970 ProSiteProfiles Myb-like domain profile. 585 635 IPR001005 -
Gso9g1460 970 CDD SANT 437 482 IPR001005 -
Gso9g1460 970 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 491 538 IPR017930 -
Gso9g1460 970 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 916 - -
Gso9g1460 970 CDD SANT 593 634 IPR001005 -
Gso9g1460 970 CDD SANT 541 584 IPR001005 -
Gso9g1460 970 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 486 IPR017930 -
Gso9g1460 970 SUPERFAMILY Homeodomain-like 564 635 IPR009057 -
Gso9g1460 970 SUPERFAMILY Homeodomain-like 411 479 IPR009057 -
Gso9g1460 970 Pfam Myb-like DNA-binding domain 539 582 IPR001005 -
Gso9g1460 970 Pfam Myb-like DNA-binding domain 592 633 IPR001005 -
Gso9g1460 970 ProSiteProfiles Myb-like domain profile. 430 482 IPR001005 -
Gso9g1460 970 Pfam Myb-like DNA-binding domain 438 499 - -
Gso9g1460 970 ProSiteProfiles Myb-like domain profile. 538 584 IPR001005 -
Gso9g1460 970 Gene3D - 489 536 - -
Gso9g1460 970 SUPERFAMILY Homeodomain-like 487 580 IPR009057 -
Gso9g1460 970 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 584 IPR017930 -
Gso9g1460 970 Gene3D - 592 637 - -
Gso9g1460 970 Gene3D - 335 431 - -
Gso9g1460 970 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Gso9g1460 970 Gene3D - 537 590 - -
Gso9g1460 970 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 585 639 IPR017930 -
Gso9g1460 970 CDD SANT 392 427 IPR001005 -
Gso9g1460 970 SMART sant 335 431 IPR001005 -
Gso9g1460 970 SMART sant 487 536 IPR001005 -
Gso9g1460 970 SMART sant 434 484 IPR001005 -
Gso9g1460 970 SMART sant 538 586 IPR001005 -
Gso9g1460 970 SMART sant 589 637 IPR001005 -
Gso9g1460 970 MobiDBLite consensus disorder prediction 43 62 - -
Gso9g1460 970 CDD SANT 490 532 IPR001005 -
Gso9g1460 970 Gene3D - 432 482 - -
Gso9g1460 970 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1460 Gso-Chr9 38734490 38740833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1460 212 683 MYB-Related Transcription Factor Family AT3G18100 52.577 4.17e-170 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g1460 Myb_DNA-bind_6 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1460 K09422 - gmx:778073 1885.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0852 7 9637081 9643655 Gso9g1460 9 38734490 38740833 GST