Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1459 ATGCGCCGTTTAATCGGACATGCCAAGGACGTTCTCTCCGTCGCGCTCGTGAACGACAGTGTTATCGTTTCTGGCTCACGTGACCACACCATCAAGGTGTGGAACACGTGCGGCACGTGCATGTCGATGGTGGATAACGGTGGCGGTGACAGTCCCACGGATTGGGTTTCATGCGTGCGGTTCATCCCGGACGTGGCGGCGGCACTGAGGGTGATGTCAGCGTCGTGGGACGGAAGCGTTAGGGTTTGGGACGTGGACGAGACGAGGACGTGGATGTGGACGGAGGCGGTGGCGCCGGGCGCGTCGTTGGCGGCGAGTGGGGGGAAGGATGGGGTGGTGCAGCTGTGGGACATGGCGGGTGGGGTGAAGATTTATGAGTTTGAGGTTTGTTCGGTTGTGCATTCATATGGGCTGTGTATTTGTCCCAACAGGTATTGGATGTGTATTGTCACGGATGAGAGAATTAGGGTTTGGGATTTGGAGAGTAAGGACATTATAAAGGATTTGAATGTCATTCATAACAACAAGGACAACAATTATATTAATGGTGGGACTGAGATTACTACCGACAAACAGGTTGGTCTTTAA 588 0.534 MRRLIGHAKDVLSVALVNDSVIVSGSRDHTIKVWNTCGTCMSMVDNGGGDSPTDWVSCVRFIPDVAAALRVMSASWDGSVRVWDVDETRTWMWTEAVAPGASLAASGGKDGVVQLWDMAGGVKIYEFEVCSVVHSYGLCICPNRYWMCIVTDERIRVWDLESKDIIKDLNVIHNNKDNNYINGGTEITTDKQVGL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1459 195 Gene3D - 1 194 IPR015943 GO:0005515
Gso9g1459 195 ProSitePatterns Trp-Asp (WD) repeats signature. 104 118 IPR019775 -
Gso9g1459 195 PRINTS G protein beta WD-40 repeat signature 22 36 IPR020472 -
Gso9g1459 195 PRINTS G protein beta WD-40 repeat signature 71 85 IPR020472 -
Gso9g1459 195 PRINTS G protein beta WD-40 repeat signature 104 118 IPR020472 -
Gso9g1459 195 PANTHER RECEPTOR FOR ACTIVATED C KINASE 1C 2 192 - -
Gso9g1459 195 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 4 35 - -
Gso9g1459 195 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 2 192 IPR045223 GO:0015935|GO:0043022
Gso9g1459 195 SUPERFAMILY WD40 repeat-like 2 174 IPR036322 GO:0005515
Gso9g1459 195 ProSitePatterns Trp-Asp (WD) repeats signature. 71 85 IPR019775 -
Gso9g1459 195 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 126 IPR001680 GO:0005515
Gso9g1459 195 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 86 IPR001680 GO:0005515
Gso9g1459 195 Pfam WD domain, G-beta repeat 2 35 IPR001680 GO:0005515
Gso9g1459 195 Pfam WD domain, G-beta repeat 55 84 IPR001680 GO:0005515
Gso9g1459 195 ProSiteProfiles Trp-Asp (WD) repeats profile. 4 35 IPR001680 GO:0005515
Gso9g1459 195 SMART WD40_4 86 117 IPR001680 GO:0005515
Gso9g1459 195 SMART WD40_4 37 84 IPR001680 GO:0005515
Gso9g1459 195 SMART WD40_4 1 35 IPR001680 GO:0005515
Gso9g1459 195 SMART WD40_4 120 159 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1459 Gso-Chr9 38731672 38732259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1459 1 181 U-box Gene Family AT2G33340 23.645 9.10e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1459 K14753 - gmx:100791022 322.398