Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1458 ATGTGGATGATGGGTTATGAAGGTGGTGAGATCAACATGGTTGAACATTCACTCAGTACAGGAAGGAAACTCAAGCCTCTCATGCCAAGGCCAATGACGACAACAACCACTCCTAGCTTATCTCACATCCATGGGAATGATTTCCTTTCACAATATCGTTATCACCATCTTGTGGCAGAAAAAAACAAGAGAGAGTTCAATGGTGCAACACCAGTTGTGGTGAGCTCAAGGTGGAATCCAAGCCCAGAGCAACTAAGAGCCCTTGAAGAATTGTACAGAAGAGGAACAAGGACACCATCTGCTGAGCAAATCCAACACATCACTGCACAGCTTAGAAGGTTTGGTAACATTGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCCAGGGAGAGGCAAAAGCGCCGCCGCCAAATGGAATCAGATGCTGAACCTCCAGAGAAGAAAGATTTAGCTGCAAGTAGGACAGTGTTTGAAGTTGAACGGACCAAGAACTGGACACCCTCAACAAACTGCAGTACTATGGCAGAGGAATCTGTTTCAACACAAAGGACAGCAAAAGCAGTAGCGGCTGCAGAGAGTAGAACAGATGGATGGCTCCTATTAGATGAAGGGGAACTACAACAAAGAAGGAACCTTTTCGAAAGGAATGCAACGTGGCATCATGTGATGCAGTTACCTTGTCCTTCTCCTTCTGCACCTGTCACCCATCTCATAAACACCACTCCTAATGCCTCTGCAGCTAGTAGCAGCATGACCACTACTACAACCACAGTAACAACAACAAGAAGAAGAAAAATGGACCCAAACCTCATTATTAAGACACATGATCTCAGCTTTTTTATTTCACCCCTGCAGAGAGAAAACAGTGTTATCTACTTAAGTAGTAGCAGTAGTACTAGTGAAGATGATAACTGTGTGGATGAGTCTCAAACCCTTCAACTTTTCCCATTAAGGAGTACTGGTGATGGAAGCAGTGACAACATGATGAAGGATAATGAGACAGAGATATCAACTTCAGCAATGAATAATGCCAACAACTTGACCACCCCTGGCCAGTTTTTTGAGTTCCTTCCTATGAAGGAGTAA 1095 0.4384 MWMMGYEGGEINMVEHSLSTGRKLKPLMPRPMTTTTTPSLSHIHGNDFLSQYRYHHLVAEKNKREFNGATPVVVSSRWNPSPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKRRRQMESDAEPPEKKDLAASRTVFEVERTKNWTPSTNCSTMAEESVSTQRTAKAVAAAESRTDGWLLLDEGELQQRRNLFERNATWHHVMQLPCPSPSAPVTHLINTTPNASAASSSMTTTTTTVTTTRRRKMDPNLIIKTHDLSFFISPLQRENSVIYLSSSSSTSEDDNCVDESQTLQLFPLRSTGDGSSDNMMKDNETEISTSAMNNANNLTTPGQFFEFLPMKE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1458 364 SMART HOX_1 73 140 IPR001356 GO:0003677
Gso9g1458 364 Pfam Homeodomain 76 135 IPR001356 GO:0003677
Gso9g1458 364 Gene3D - 74 136 - -
Gso9g1458 364 CDD homeodomain 77 137 IPR001356 GO:0003677
Gso9g1458 364 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 44 363 - -
Gso9g1458 364 MobiDBLite consensus disorder prediction 134 153 - -
Gso9g1458 364 ProSiteProfiles 'Homeobox' domain profile. 81 136 IPR001356 GO:0003677
Gso9g1458 364 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 44 363 IPR044555 GO:0003700|GO:0099402
Gso9g1458 364 SUPERFAMILY Homeodomain-like 76 141 IPR009057 -
Gso9g1458 364 MobiDBLite consensus disorder prediction 137 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1458 Gso-Chr9 38696983 38701576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1458 1 363 Wox Gene Family AT3G18010 36.250 1.16e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso9g1458 Homeodomain 1.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1458 - - gmx:100812656 679.478