Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1456 ATGGAGCCTTCCTCGATCTCTCCACCGCCAGCTCCGCCTGCCACCGCCGTCCCCTTCCCCGCCGAACCCAACGACCACCTTCCACCACCCATTCCCGAACCACCTTCTAACCACCCACCCTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAAGACGGTTCTAGCAAGAGGGCAATAGCGAAGTATATTGAGCAAGTGTATACGCAGCTTCCACCGAATCACTCAGACTTGTTGACTCAGCACTTGAATCACTTGAAGAGTAGGGGATTGCTCCAAATGGTAAAAAAATCTTACGCCCTTCCTAGATCTGTGCCCGTGTCTGTTCCTGGACCTGCACCCACACAAGGGACATCAGCAGTGCCGGCTGCTGTTGTTGCCATCACGACGACTCCGAGGCCCAGAGGTCGGCCTCGCAAGGCCCAAAATCCAGTTCAGAACTCGCCTCTGCCTCAGGACACTGTCAACGTGCAGGTTCAGCAGAATGCCGAGCCGGTCTGGGCTGCGCTTGGGCTTGCAGACGAGCCCGTGCAAGCGGAAGGCAGTGGCAAGAAGCGAGGTCGTCCGAAGAAGAGTGGCATCTTAGGAGCGGGCCTGACCAAGAGGGGCCGTCCTCCCGGCTCTGGAAAAAAGCCGGGCCGTCCTCCCAAGGCAACCACAACAGATGTTTCTGCTTCTGCTGGGCCCAAGAGACGTCCAGGCCGCCCGCCCAAGAATCAGTCGCAGCCCACTCTCATTCCCTTTGCTCCGGCTGTATCTGCCGCTTCCGTGGATACAGAGCACGTGGCAGCATCAGCTGAAACTGCGCCGGTTGATGCTGACGCGGCTCTCGGACCAAGAGCCCGTGGACGGCCGAAGAAATATGCTGACGAGATGATTGCTGCGGGCCGAGGCAGGGGACGGGGCCGTGGGCGCGGTGGCGGCGGAAGAGGACGAGGGAGAGGGCGTGGTGAATTGCCTGCACAGCCCAGAAAACCAGGGGCAAGGCCCGTGGGTCGTCCGAAAAAGGGTTCAACTTCTGCTAGTACTTCTCAAAATGCTGCAAATGAAGATCTCAGGAGGAAGCTTGAACACTTTCAATCAAAAGTCAAGGAATCTCTTGCAGTGCTTAAGCCTCATTTTAACCATGAAAGTCCAGTCACTGCAATTGCTGCTATTCAAGAGCTAGAAGTACTGGGAACTATGGACCTCAATGTACCACTAAGGGATGAAACACTTCCACATCAAGTGGAGCTGCCACCACCACAGCCTCCAGTGCAGCAGCAGCAGCAGCCACCACAGCAGCAGCTGCAGCAGCCACCACAGCAGCCACCACAGCAACACCTAGCACCACAACAACTGCCGCCACAGCCACCGATATTTCAGCAAACATATCCTCCATTTCATCTGCCGCAGTTCCACCATCACCAGCCTTCGCTGCAGTTCCAGCAACAGCAGCAGCAGCCGCCACAGCCACCGCCACAGCTATTCCAGCACCAGGCACAGCCTCCTTCCCACCAACAGTTTCATCCTTAG 1524 0.5709 MEPSSISPPPAPPATAVPFPAEPNDHLPPPIPEPPSNHPPYAEMIYTAIEALKEKDGSSKRAIAKYIEQVYTQLPPNHSDLLTQHLNHLKSRGLLQMVKKSYALPRSVPVSVPGPAPTQGTSAVPAAVVAITTTPRPRGRPRKAQNPVQNSPLPQDTVNVQVQQNAEPVWAALGLADEPVQAEGSGKKRGRPKKSGILGAGLTKRGRPPGSGKKPGRPPKATTTDVSASAGPKRRPGRPPKNQSQPTLIPFAPAVSAASVDTEHVAASAETAPVDADAALGPRARGRPKKYADEMIAAGRGRGRGRGRGGGGRGRGRGRGELPAQPRKPGARPVGRPKKGSTSASTSQNAANEDLRRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNVPLRDETLPHQVELPPPQPPVQQQQQPPQQQLQQPPQQPPQQHLAPQQLPPQPPIFQQTYPPFHLPQFHHHQPSLQFQQQQQQPPQPPPQLFQHQAQPPSHQQFHP* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1456 507 MobiDBLite consensus disorder prediction 282 301 - -
Gso9g1456 507 MobiDBLite consensus disorder prediction 1 40 - -
Gso9g1456 507 PANTHER HISTONE H1-LIKE 10 308 - -
Gso9g1456 507 PANTHER HISTONE H1-LIKE 311 408 - -
Gso9g1456 507 MobiDBLite consensus disorder prediction 133 155 - -
Gso9g1456 507 MobiDBLite consensus disorder prediction 433 461 - -
Gso9g1456 507 SMART AT_hook_2 282 294 IPR017956 GO:0003677
Gso9g1456 507 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Gso9g1456 507 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Gso9g1456 507 SMART AT_hook_2 331 343 IPR017956 GO:0003677
Gso9g1456 507 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Gso9g1456 507 SMART AT_hook_2 233 245 IPR017956 GO:0003677
Gso9g1456 507 Gene3D - 34 111 IPR036388 -
Gso9g1456 507 MobiDBLite consensus disorder prediction 403 507 - -
Gso9g1456 507 Pfam linker histone H1 and H5 family 38 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso9g1456 507 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Gso9g1456 507 PRINTS AT-hook-like domain signature 231 242 IPR017956 GO:0003677
Gso9g1456 507 PRINTS AT-hook-like domain signature 329 339 IPR017956 GO:0003677
Gso9g1456 507 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso9g1456 507 SUPERFAMILY "Winged helix" DNA-binding domain 34 113 IPR036390 -
Gso9g1456 507 PANTHER HISTONE H1 311 408 - -
Gso9g1456 507 PANTHER HISTONE H1 10 308 - -
Gso9g1456 507 MobiDBLite consensus disorder prediction 181 360 - -
Gso9g1456 507 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso9g1456 507 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso9g1456 507 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso9g1456 507 Coils Coil 352 372 - -
Gso9g1456 507 MobiDBLite consensus disorder prediction 1 39 - -
Gso9g1456 507 CDD H15 36 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso9g1456 507 SMART h15plus2 35 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1456 Gso-Chr9 38652128 38658396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1456 44 111 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 4.55e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1456 - - gmx:100788215 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0859 7 9756043 9761730 Gso9g1456 9 38652128 38658396 GST