Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1420 ATGAGTTCTCAACTTCGGAGAGAAAGAAGGGACTGGTCCAGGGTTCCACCACAAGGTGCTACTCGTCAAGAATGGGTCCCCAGAGGGGCTGCTGCTGCGTCCAGCAATGTTGCTCAGCCATCAAATTTGCATTCAAACAACAATGCTGATGCTGGTTCTTCCAATCAAGGGGTGGCCGTCGCTGCTCCGTCGTCGGTGAGTCGCGCTAGAAGCAACAATCATGGGAATGATTCCGGTTCTTCCAATCAAGGGGTGGCCGTTGCTGTTGTGTCGGTTAGTCACGGTAGAAGCAACAATCATGGGACTGATGCTGCCGGTTCTTCCAATCAAGGGGTGGCCATTGCTGCTCTGTCGGTGAGTCGCGGTAGAAGCAACATTCATGGGAATGATGCTGGTTCTTCCAATCAAGGGGTGGCCGTTGCTGCTCTGCCAGCCAGTCGCGGTAGAAGCAACAATCATGGGACTGATGCTGCCGGTTCTTCCAATCAAGGGGTGGCCATTGCTGCTCTGTCAGTGAGTTGCGGTAGAAGCAACATTCATGGGCATGATGCTGGTTCTTCCAATCAAGGGGTGGCCGTTGCTGCTCCACCAGCCAGTCGCGGTAGAAGCAACAATCCCAGGAATGATGCTGGTTCTTCCAATCAAGGTTTGGCCGTTGCTCCGCCGGTGAATCGTGGTAGAAGCAACAATCAAGGGAAAGATTCTGGTCCTTCCAGTCAAGGGGTGGCTGTTGCTGCACTGGCGAGTCGTGGTAGAAGCAACAATCATGGGACTCATAGGATGGAAAAGGAAAAGGATAAGGGGAACAAGAGTGGGAGTCAGGTGGAGAAGGGATTGGGAGTGGGAGTCAGATACTCTAGTTTGCCTCAACTGGTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTACTGTGGAGTGCATGATTTGCTATGAGATGGTCCAGAGGTCTGCGGCGGTTTGGTCTTGCTCCAGCTGTTACTCTATCTTTCACCTGAACTGCATCAAGAAGTGGGCTAGGGCACCAATTTCAAGTGATTTGTCCTTGTCTGTGGAGAAGAATCATGAGCTTAATTGGCGGTGTCCTGGTTGCCAGTCTGTGAAATTTACCTCTTCAAAGGAGATTAGGTATGTTTGCTTTTGTGGGAAGAGGATAGACCCTCCATCTGATTTGTATCTGACACCTCACTCGTGTGGAGAACCATGTGGGAAGCCTCTTCAGAAGGTGTTGGTTGCTGGAGGGAATAGGGATGATCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCAGGACCATGCCCTCCCTGTAAAGCATTTGCTCCTCCTCGGTTGTGCCCTTGTGGGAAGAAAAATATTACCACCCGTTGCTCTGATCGGCAGTCTGTTCTTACCTGTGGACAATGCTGTGATAAACTTCTTGAATGTGGGCGGCATCGCTGTGAACACATTTGTCATGTGGGTCCATGCAATCCTTGTAAGGTTCCAATCAGTGCAACTTGTTTTTGCAGTAAAAAGACAGAGGTTTTTTCTTGTGGGGACATGTCTGTGAAGGGTGAAATTGAAGCAAAAGGTGGGGTTTTTGCTTGTGGTTCCTATTGTCTAAAGAAACTTGGTTGTGGTAATCATGTCTGTAGTGAGATTTGCCATCCAGGAAGCTGTGGGGAATGTGAATTTTTACCTAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGAATGAACGCCAGAGTTGTTTGGATCCGATACCTACCTGCTCTAAAGTATGTGGCAAGCTGCTTCATTGTGGCATGCATAGTTGTAAAGAGGCATGTCATGTTGGGGAGTGTCCACCTTGCTTGGTTGAAGTTTCACAGAAGTGCCGTTGTGGCTCAACTTCCCGAACTGTGGAGTGCTATAAGACTACGATGGAGAATGAGAAATTTTTGTGTGAAAAGTCTTGTGGGATAAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCATTTACTAATTCAAATCATTATAATACCTTTAGTGGGGATTGGGCTCCTCACTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGGTGTGGCCAGCATTCGTGTGAATGTCTGTGTCACAGTGGTCATTGTCCACCTTGTTTCCAAACAATCTTTAATGAATTGGCTTGTGCTTGTGGTAGGACTTCAATACCTCCTCCTCTACCGTGTGGCACACCGCCTCCCTCATGTCAGCTTCCGTGCTCAGTTCCTCAGCCATGTGGTCATTCAGTCTCACACAGTTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATGTATTGGCGGGCATGTAGTTCTTAGAAACATACCTTGTGGTTCAAAGGATATCAGATGCAATCATCCCTGTGGGAAGACCAGGCAGTGTGGTTTACATGCATGTGGTAGAACATGTCACCCCCCACCTTGTGATAGTCAATCTGGTGTTGTGCAAGGTTTCAAAGCACCATGTGGCCAAACATGTGGTGCTCCAAGAAGAAGCTGCCGGCACACATGTATGGCTCCTTGTCACCCTTCATCTCCATGCCCAGATATAAGGTGTGAATTCCCTGTTACAATCACTTGCTCTTGTGGCCGTGTAACCGCAAATGTTCCTTGTGATGGTGGTGGTAGCAGTAGCAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAACATTGCCTGCACCACTTCAACCAGTTGATGCAAATGGCAAGAAAGTTCCCCTAGGACAAAGAAAACTGATATGTGATGATGAATGTGCTAAGCTGGAACGCAAAAGGGTTCTCGCAGATGCTTTTGACATTACTGCTCCAAATCTGGACTCTCTTCATTTTAGTGATAACTCTCTTTCTTCTGAATTGCTTTCTGATTTTTTTAGGCGTGAGCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTTCTTGGCAAGAGTAGAGGAATAGGAACTGCACATGGTTTAAAAGTCCACATCTTTTGTCCCATGCTGAAGGAAAAAAGAGATGCAGTGAGATTGATTGCTGATAGATGGAAGCTTGCAGTCAATGCTGCTGGCTGGGAGCCAAAGCGATTTATTGTAATTTCTGTTACCCCAAAATCAAAGGCCCCAGCTCGTGTGATAGGGGTTAAGGGTACTACAACTTTAAATGTGCCTCTTCCTCCTGCATTTGATCCATTGGTTGATATGGACCCGCGACTTGTTGTCTCGTTTCCAGACTTACCAAGGGATACTGAAATTAATTCCTTGGTGTTGAGGTTTGGTGGCGAGTGTGAGCTTGTTTGGTTGAATGACAAGAATGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATTATGCAACAGTTTATCAGGGAGCTGTTTTGGTTGCCCCGAATGCTGGGGCATCGGCGGCATCTTCAGCTACCAATGCCTGGGGAGGAGCTCTGCCGGCATTGAAAGGTAACTCATGGAAAAAGGCTGTGGCTCAAGACTCTGGTTGGGGAGATTCTGGGGTTGGTGAAGAGTGGACTGCTGGTTCTGTGAATATCCAGCCATCTGTTTGGAAGAAGGAAGCACCTCTGGCTGCTTCTTTAAATCGTTGGAATGTCTTGGAGCAGGAGTCAAGTTCAAGTTCATCGTCTACAACTATTAGAGCTGATATTTCTGGGAAGAAAACTGAAAATACTGGTGAAGAAGGTGGCTCAAAGGAAGAGGAAAACTTGGATGCAACTTCTGAAGTAGTTGATGATTGGGAGAAGGCTTATGAATGA 3813 0.4718 MSSQLRRERRDWSRVPPQGATRQEWVPRGAAAASSNVAQPSNLHSNNNADAGSSNQGVAVAAPSSVSRARSNNHGNDSGSSNQGVAVAVVSVSHGRSNNHGTDAAGSSNQGVAIAALSVSRGRSNIHGNDAGSSNQGVAVAALPASRGRSNNHGTDAAGSSNQGVAIAALSVSCGRSNIHGHDAGSSNQGVAVAAPPASRGRSNNPRNDAGSSNQGLAVAPPVNRGRSNNQGKDSGPSSQGVAVAALASRGRSNNHGTHRMEKEKDKGNKSGSQVEKGLGVGVRYSSLPQLVQEIQEKLMKGTVECMICYEMVQRSAAVWSCSSCYSIFHLNCIKKWARAPISSDLSLSVEKNHELNWRCPGCQSVKFTSSKEIRYVCFCGKRIDPPSDLYLTPHSCGEPCGKPLQKVLVAGGNRDDLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQCCDKLLECGRHRCEHICHVGPCNPCKVPISATCFCSKKTEVFSCGDMSVKGEIEAKGGVFACGSYCLKKLGCGNHVCSEICHPGSCGECEFLPSRVKTCCCGKTRLENERQSCLDPIPTCSKVCGKLLHCGMHSCKEACHVGECPPCLVEVSQKCRCGSTSRTVECYKTTMENEKFLCEKSCGIKKNCGRHRCSERCCPFTNSNHYNTFSGDWAPHFCSMPCGKKLRCGQHSCECLCHSGHCPPCFQTIFNELACACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSVSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNHPCGKTRQCGLHACGRTCHPPPCDSQSGVVQGFKAPCGQTCGAPRRSCRHTCMAPCHPSSPCPDIRCEFPVTITCSCGRVTANVPCDGGGSSSNYNADAIHEASIIQTLPAPLQPVDANGKKVPLGQRKLICDDECAKLERKRVLADAFDITAPNLDSLHFSDNSLSSELLSDFFRREPKWVLAVEERCKILVLGKSRGIGTAHGLKVHIFCPMLKEKRDAVRLIADRWKLAVNAAGWEPKRFIVISVTPKSKAPARVIGVKGTTTLNVPLPPAFDPLVDMDPRLVVSFPDLPRDTEINSLVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDYATVYQGAVLVAPNAGASAASSATNAWGGALPALKGNSWKKAVAQDSGWGDSGVGEEWTAGSVNIQPSVWKKEAPLAASLNRWNVLEQESSSSSSSTTIRADISGKKTENTGEEGGSKEEENLDATSEVVDDWEKAYE* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1420 1270 CDD NF-X1-zinc-finger 528 573 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 34 83 - -
Gso9g1420 1270 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 282 1243 IPR034078 GO:0003700
Gso9g1420 1270 ProSiteProfiles Zinc finger RING-type profile. 306 364 IPR001841 -
Gso9g1420 1270 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 282 1243 - -
Gso9g1420 1270 SMART znfxneu3 804 834 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 694 713 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 474 493 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 419 437 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 596 615 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 751 769 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 538 557 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 SMART znfxneu3 843 864 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 MobiDBLite consensus disorder prediction 201 238 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 397 457 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 684 727 - -
Gso9g1420 1270 CDD RING-CH-C4HC3_NFX1 305 364 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 1219 1270 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 464 512 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 255 272 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 1 15 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 794 852 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 180 276 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 586 634 - -
Gso9g1420 1270 CDD NF-X1-zinc-finger 741 789 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 1 83 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 1219 1237 - -
Gso9g1420 1270 SUPERFAMILY RING/U-box 296 367 - -
Gso9g1420 1270 MobiDBLite consensus disorder prediction 1238 1270 - -
Gso9g1420 1270 ProSiteProfiles Zinc finger PHD-type profile. 303 366 IPR019787 -
Gso9g1420 1270 CDD NF-X1-zinc-finger 832 881 - -
Gso9g1420 1270 Pfam NF-X1 type zinc finger 804 819 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 421 436 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 751 768 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 654 665 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 836 861 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 538 555 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 474 492 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 596 613 IPR000967 GO:0005634|GO:0008270
Gso9g1420 1270 Pfam NF-X1 type zinc finger 694 711 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1420 Gso-Chr9 38238516 38243073 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gso9g1420 zf-NF-X1 20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1420 K12236 - gmx:100819219 2591.99