Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1417 ATGGCCCTTATTCGTCGCCGCCACCCCAACCTCCGCCTCCCCATCTTAGAGCCCACTGAGCGCAAACCCCACTTCTCCCTTCCCTTAGTACCCCCCACCACCAAACCCACCACCAATGATGATATCACCATTGATGACCTTGAGAAGCTCGTTGTTCTAGGCCATGGAAATGGCGGAACCATCTACAAGGTCTACCATAAAACCACCTCCACCACTTGCGCGTTGAAGATCATCCATGGTGGCACTGACGTCACCACACACCGTCGTGCCCTCGTGGAAGCATCAATTCTTCGTCGTGCCACTAATTGCCCCCATGTGGTTAACTTTTATAGCTCTTTCGAGATGCCCACCGGCGATGTGGCAATCCTCATGGAGTACATGGATGGTGGCTCCCTTGAGACTGCCCTTGCTGTCAACGGCACATTCTCTGAAGAGCGACTTGTCACAGTGGCGCGTGATGTCCTCGACGGACTTGCATACCTTCATGCACAGAACATTGTGCATCTTGACATCAAGCCTGCGAACATCCTCATAAACACTCAAGGGGAGGTTAAGATTACTGACTTTGGAGTCAGCAAAGTCATGAGTCACACACTCGAAATGTGTAATTCTTATGTCGGCACATGTGCATACATGAGCCCTGAACGGTTCAACTCAGATGCGTATGGTGGGGAATATAATGGTTTTGCTGCCGACGTATGGAGTTTGGGTTTAACACTTTTGGAACTCTATGTGGGTTACTTCCCACTTCTTCAAGAGGGTCAAAGACCCAATTGGGCCACCCTTATGTGCGCCATTTGCTTTGATGAACCACCAAGCCTCCCAGAGACTGCATCGCCAGAGTTTCGCAACTTTGTTGAGTGTTGCCTCAAGAAGGAGTCTAGCGAAAGGTGGACAACAAATCAACTCTTGAACCACCCATTTGTTTGCAAAAACCCAAAAACCTATTAA 951 0.4963 MALIRRRHPNLRLPILEPTERKPHFSLPLVPPTTKPTTNDDITIDDLEKLVVLGHGNGGTIYKVYHKTTSTTCALKIIHGGTDVTTHRRALVEASILRRATNCPHVVNFYSSFEMPTGDVAILMEYMDGGSLETALAVNGTFSEERLVTVARDVLDGLAYLHAQNIVHLDIKPANILINTQGEVKITDFGVSKVMSHTLEMCNSYVGTCAYMSPERFNSDAYGGEYNGFAADVWSLGLTLLELYVGYFPLLQEGQRPNWATLMCAICFDEPPSLPETASPEFRNFVECCLKKESSERWTTNQLLNHPFVCKNPKTY* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1417 316 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Gso9g1417 316 Pfam Protein kinase domain 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1417 316 ProSiteProfiles Protein kinase domain profile. 47 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1417 316 SMART serkin_6 47 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1417 316 CDD PKc_MAPKK_plant_like 45 309 - -
Gso9g1417 316 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 4 312 - -
Gso9g1417 316 SUPERFAMILY Protein kinase-like (PK-like) 44 312 IPR011009 -
Gso9g1417 316 Gene3D Transferase(Phosphotransferase) domain 1 129 316 - -
Gso9g1417 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gso9g1417 316 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 4 312 - -
Gso9g1417 316 Gene3D Phosphorylase Kinase; domain 1 31 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1417 Gso-Chr9 38202271 38203221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1417 1 309 MAP Kinase Kinase Gene Family AT1G18350 54.341 4.77e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso9g1417 Pkinase 4.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1417 K20604 - gmx:100818688 501.901