Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1412 ATGGTGTTGGGGTGGAGGAGAAGGAAGGGCAGCAACAAAAACCGTCGCAAAGGTGGCAAATCCATCGCTGAGTTGGTGACTCCCAATCACTTCAGATGTCCAATTTCTCTTGACTTGATGAAGGATCCTGTGACATTGTCAACAGGGATAACCTACGATAGGGAGAGTGTGGAGATGTGGTTTGATGAAGGGAACATCACATGTCCTGTCACAAACCAGGTTGTGAGGAACTTTGACATGATTCCAAACCATTCCCTTAGGGTAATGATTCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGGATACCAATTGGCTCAATTGAGGTTGCTGAGCTTCTGATGCTAGTGAAGGCCTCGTCAACGGATTTGGACCAATATGGTTGCCTTGAATTGGTGCAGAAACTGAAGAGGTGGGGTGGTGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGAGCACCTGTGGCATTGGCTTCATCATTTGATGCATTTGCCAATGATTCCATTGAGAGGAATGTGGTGCTTCTTGAGGAGATTTTGTCAGCACTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCTTTGGGGTCTTTGGCTTCTCTAAGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTGAAATTTGGTGATGTGAAGCATTTGGAGGCCTTGTCACAAATTGAAGGGGTCAATGAACTCTTGGTGGAGTTCATCAACAAGAGGATTAGTCCAACCATCACAAAGGCCTCATTGAGTGTGGTTTGGTACTTGGTTTCATCCTCTTCCAATTCAAGTGATAAGATGAGGTTGAAATTTGTTGAATTGGGTTTGGTTTCTTCTTTGCTTGACATTCTCATTGACTCAGACAAGAGCATGTGTGAGAAGGCTGTGACCATTTTGGACTCTCTATGCAGCTCTGAAGAAGGAAGGAACAAGGCTTGTGGGAATGATCTAACAATTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCACCTTTGACAACAGACTATTCTGTTTCTGCGATTTGGAAACTGTGCAAGTTTGGAGAAAAAGATGAAGGGAGAACCCTTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGATGTGGTGATGAGACTAAGGAGAAAGCAACTGAACTTCTCAAATTGCTCAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1317 0.4396 MVLGWRRRKGSNKNRRKGGKSIAELVTPNHFRCPISLDLMKDPVTLSTGITYDRESVEMWFDEGNITCPVTNQVVRNFDMIPNHSLRVMIQDWCVENRQHGVERIPTPRIPIGSIEVAELLMLVKASSTDLDQYGCLELVQKLKRWGGESERNKRCIVDNGAPVALASSFDAFANDSIERNVVLLEEILSALNWMFPLQLEAHKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLKFGDVKHLEALSQIEGVNELLVEFINKRISPTITKASLSVVWYLVSSSSNSSDKMRLKFVELGLVSSLLDILIDSDKSMCEKAVTILDSLCSSEEGRNKACGNDLTIPLLVKKILRVSPLTTDYSVSAIWKLCKFGEKDEGRTLVEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRAELECIDSDYKNVKRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1412 438 CDD RING-Ubox_PUB 31 73 IPR045210 -
Gso9g1412 438 SUPERFAMILY RING/U-box 24 103 - -
Gso9g1412 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Gso9g1412 438 MobiDBLite consensus disorder prediction 1 20 - -
Gso9g1412 438 SUPERFAMILY ARM repeat 213 417 IPR016024 -
Gso9g1412 438 Pfam U-box domain 28 98 IPR003613 GO:0004842|GO:0016567
Gso9g1412 438 PANTHER WDSAM1 PROTEIN 16 438 IPR045185 GO:0061630
Gso9g1412 438 MobiDBLite consensus disorder prediction 1 16 - -
Gso9g1412 438 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Gso9g1412 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 438 - -
Gso9g1412 438 Gene3D - 122 418 IPR011989 -
Gso9g1412 438 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1412 Gso-Chr9 38161039 38162871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1412 23 438 U-box Gene Family AT5G37490 43.437 5.89e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1412 - - gmx:100817623 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0897 7 10369338 10371047 Gso9g1412 9 38161039 38162871 GST