Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1407 ATGCCCCAGAATAAGATTTTCCATGACCAACAATCATCGAATCCGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCACTGAAGGGGATTCACCCTTTGATGCTGAAGGCTTCAAATCACACAGTGATGGTTCAATCAAAGGTTGCAGTAGCCCCTATCACACAGACACACAACTTTCCTTAGCCAACCCTACAAATACTACTTCTACTCCTTCTGAGGCTGAAAGCACATGGAGGAAGAGAAACTTTGTTAGGCTTGTTGCTGAGGGTCAAATAAGACTCATTAATGGAATCCCTCTCTACAGTAACCTTTCTTCTTTGGATACTATTCCCTCAATAGAGAGAAACCAACCTACCAATAAGTTTTCCTTTTCTTCTCTATATGCATTTCCACACCCTCCTTCAGCTCCTAATTATGGCAATAATAATGGTGTTGTTGGGGGTGTAGCAGTAGAACCAATATCAAGGTTTCGTGAGATAAGGACCATGGAGAGTAGTAGTCTAAGACCTCAACAGTTTCAGTACTTTGATTACCCTCATCAGCATCAGCATCATCATCAACAGCAGCAGTTTGGGAGTAGTAATAATATTGGAGCTTCTGATTTTTCTTCAAATGGATTTGTGAGGTCAAGAATGTTTTCAAGGCAACAAAGTAATAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCACAATCGCTTTGTTCATGCTGTTGAGCTACTTGGTGGCCATGAAAGGGCTACCCCTAAGTCAGTTTTGGAGCTCATGGATGTCAAAGATCTAACACTAGCTCATGTCAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCAGCTTCTTCAGATGGGGATGAAGATTTCATGTCCTTAACAGTACCAAATGATCAAAATAACAGTTTTTTACCCAATCAGAGAGGAACTTCAAATGCATCTATAGATAATGATATGGGCTACACTTCAAGCAATCTATGGGTTAATTCTTCTTCGAGCGCTAGAGGAGCACGGATACAAGCTAACTCAAGAGATTTGGATGAGCTTAGTCCACAAGAAATCTTATCATCTCAGCATACTGGGAAACTTTCTGAGGGTAGCAACTATATACAAACAAGAATCTTCAACAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAAATTGGCACAACAGTGAACATGCCTAA 1239 0.4108 MPQNKIFHDQQSSNPIPDLSLHISLPNSAPSSICTEGDSPFDAEGFKSHSDGSIKGCSSPYHTDTQLSLANPTNTTSTPSEAESTWRKRNFVRLVAEGQIRLINGIPLYSNLSSLDTIPSIERNQPTNKFSFSSLYAFPHPPSAPNYGNNNGVVGGVAVEPISRFREIRTMESSSLRPQQFQYFDYPHQHQHHHQQQQFGSSNNIGASDFSSNGFVRSRMFSRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTVPNDQNNSFLPNQRGTSNASIDNDMGYTSSNLWVNSSSSARGARIQANSRDLDELSPQEILSSQHTGKLSEGSNYIQTRIFNKDQNPSLEFTLGRSNWHNSEHA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1407 412 MobiDBLite consensus disorder prediction 35 59 - -
Gso9g1407 412 Pfam Myb-like DNA-binding domain 235 286 IPR001005 -
Gso9g1407 412 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 412 - -
Gso9g1407 412 MobiDBLite consensus disorder prediction 65 84 - -
Gso9g1407 412 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 234 287 IPR006447 GO:0003677
Gso9g1407 412 SUPERFAMILY Homeodomain-like 231 288 IPR009057 -
Gso9g1407 412 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 412 IPR044847 GO:0000976|GO:0006355|GO:0010158
Gso9g1407 412 Gene3D - 233 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1407 Gso-Chr9 38083829 38087800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1407 228 349 G2-like Transcription Factor Family AT4G17695 59.016 5.08e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso9g1407 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1407 - - gmx:100814432 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0905 7 10462709 10472237 Gso9g1407 9 38083829 38087800 GST