Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1403 ATGGAGAACTCATCATCATCATCTTCATGTTCAAACTATCTCTACCGAGAGTGCCTCCGCAACCATGCAGCCAGCCTCGGTAGCTACGCTACCGACGGCTGTGGGGAGTTCACCCTGGACGTGGACAGCGTCTCGTCCCCCTCCCTCCAGTGCGCAGCCTGCGGCTGCCATCGCAACTTCCACCGCAAGGTCACGTGCCCCGCGGTGGAAGGAGGGTTGCAGGCCGTGACTGGAGGGAGTGGGGACATGATGGAGTACTCCGGGGGCGGAGACGTGGGAAGAATAACGGAGATGGGAGAGAGGAGTGGCGGCAGCAAGAAGAGGTTCAGGACGAAGTTCAGTGCTGAGCAGAAGGAGAAGATGCTGGGGTTCGCGGAAAAGCTGGGGTGGAAGCTGCAGAGAAAAGAGGTGGATGATGAGATTGAGAGGTTCTGTAAAAGTGTGGGTGTCACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCCAACACTTCTACTAATTCTTCTGCTAATCTCTCTTCTCTCACTCAGTCATGA 549 0.5483 MENSSSSSSCSNYLYRECLRNHAASLGSYATDGCGEFTLDVDSVSSPSLQCAACGCHRNFHRKVTCPAVEGGLQAVTGGSGDMMEYSGGGDVGRITEMGERSGGSKKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNTSTNSSANLSSLTQS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1403 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 11 172 - -
Gso9g1403 182 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 15 63 IPR006456 -
Gso9g1403 182 SUPERFAMILY Homeodomain-like 96 165 IPR009057 -
Gso9g1403 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 172 - -
Gso9g1403 182 MobiDBLite consensus disorder prediction 162 182 - -
Gso9g1403 182 MobiDBLite consensus disorder prediction 88 111 - -
Gso9g1403 182 Pfam ZF-HD protein dimerisation region 13 65 IPR006456 -
Gso9g1403 182 Gene3D - 92 170 - -
Gso9g1403 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 15 64 IPR006456 -
Gso9g1403 182 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 106 164 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1403 Gso-Chr9 38037546 38038331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1403 15 164 ZF-HD Transcription Factor Family AT4G24660 45.833 3.02e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso9g1403 ZF-HD_dimer 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1403 - - gmx:547765 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0910 7 10552336 10553402 Gso9g1403 9 38037546 38038331 GST
Gso5g2117 5 44074116 44074951 Gso9g1403 9 38037546 38038331 PCT
Gso8g0477 8 4375369 4379454 Gso9g1403 9 38037546 38038331 PCT
Gso9g1403 9 38037546 38038331 Gso5g2117 5 44074116 44074951 PCT
Gso9g1403 9 38037546 38038331 Gso8g0477 8 4375369 4379454 PCT