Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1400 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCGCCGAAGACGTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTACTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGTCATGCCTTGGGTGACCTTGTTGGAATTAAGAAGCATTTCAGGAGGAAGCACAGCAATCATAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCTGAGTCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCCTCAAGCCCGAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGGATGATAATACCAAAGCCATCAGAACCACCAACAATCTTCATGAATAACCCTATTACTGCTATCACCACTGCTGAAACCTCATCCAAGAGCAACAACAAACTACTCCACCCCAACTTGGATCTTCAACTCTCCACCCCCACCACCACCAACAACACATCAAATGTTGCAAACCGTATTGATGCTGCAATATCACCTAAGAGGGATCATCATCATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATATGAGTGAGAAGAACGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACATTAATGATCAGAATAATAATAATAAGCAGTCCAACAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAGCACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAGCTGGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCGGAACTCGACAAAGCCTACTCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCATGGTTGCAAACAACAGTTCCAAGCTCGAAATGCAGCAACCACCCCCGATGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATTACCACGGAAGGAGGAGGAGAAGTAGAAAATGATAATAATGCAAAAGATCATGGCAAAGACAACAACTAA 1425 0.4681 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPSEPPTIFMNNPITAITTAETSSKSNNKLLHPNLDLQLSTPTTTNNTSNVANRIDAAISPKRDHHHHHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNINDQNNNNKQSNNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYSLKEHAMKQINSTMLQITCHGCKQQFQARNAATTPDENSLVLSYVSSAITTEGGGEVENDNNAKDHGKDNN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1400 474 PANTHER OS03G0310200 PROTEIN 1 455 IPR039288 GO:0009630
Gso9g1400 474 Gene3D Classic Zinc Finger 35 97 - -
Gso9g1400 474 MobiDBLite consensus disorder prediction 288 342 - -
Gso9g1400 474 MobiDBLite consensus disorder prediction 194 220 - -
Gso9g1400 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gso9g1400 474 Gene3D Classic Zinc Finger 119 195 - -
Gso9g1400 474 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Gso9g1400 474 MobiDBLite consensus disorder prediction 1 24 - -
Gso9g1400 474 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gso9g1400 474 MobiDBLite consensus disorder prediction 302 342 - -
Gso9g1400 474 MobiDBLite consensus disorder prediction 193 237 - -
Gso9g1400 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 455 - -
Gso9g1400 474 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gso9g1400 474 Coils Coil 357 412 - -
Gso9g1400 474 MobiDBLite consensus disorder prediction 454 474 - -
Gso9g1400 474 MobiDBLite consensus disorder prediction 1 44 - -
Gso9g1400 474 SMART c2h2final6 57 79 IPR013087 -
Gso9g1400 474 SMART c2h2final6 98 128 IPR013087 -
Gso9g1400 474 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1400 Gso-Chr9 37994091 37997756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1400 20 462 C2H2 Transcription Factor Family AT2G01940 51.515 4.18e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso9g1400 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1400 K25871 - gmx:100800187 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0913 7 10588872 10592551 Gso9g1400 9 37994091 37997756 GST
Gso5g2118 5 44085809 44087984 Gso9g1400 9 37994091 37997756 PCT
Gso8g0478 8 4389027 4391041 Gso9g1400 9 37994091 37997756 PCT
Gso9g1400 9 37994091 37997756 Gso5g2118 5 44085809 44087984 PCT
Gso9g1400 9 37994091 37997756 Gso8g0478 8 4389027 4391041 PCT