Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1396 ATGGCAGACACAAATTCAGTTGAAGTGATTTTGGATTTTCTGAAGAGGAATCGGTTCACGCGAGCTGAGGCAGCTTTGCGTAGTGAGCTCAGTAACTGTTCTGATGTGAATGGTTTCTTGCAGAAGCTTACATTGGACGAAAAGGACTTGCATGGTGGGTTGCAGAATGATAAGGGGAAGCCCGTGGTAGAAAATCAAGGGTTGGATTCTCGTGACAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAGTGTGGGACTGGTAAAAATGCTTCTGAAAGCAAGTGGAAAACTGTTGCTCCTACTGGTGAAAGCAATAAGTCTAATGAAGTGGTTGGGACGAGTGACAAAAACTTCACTTTCTCCAAGAGTTCGGAGGACAGTGTTCTTGATTTGTACTCATGGAAGTTTAATGCCAGCAATGGTCCTGTGGAGCCTTACCAAAATGATGGTGGAAGTAGGCCTAATAATGATTTAAAGGCCCCGGTATCTCAGCAATCAAAGTATCAAACTAGTGAAGCCCTTGATGCAACCAACAGGAATGTGAAATCTAGGGAGGAAAATAATGTGCCTGCCGAAAAAACATCCTCATGGCTTGGAAATATTGGTAAAGCCTCTACGGAACCAAAGTATGACCTTATGCAGAGCAAAGAACCTAGGGAAATTGATCGGCAGTTTAAATTTAATGCTTCATCTCTTAAAGAGAACTTGACAGATAATGTCTTATCAAGAACTGATGAGAATGTGAATTCATCTACAGACCTATGGAAAGATTGTTCTGTCAAGACTGTTTTCCCTTTCTCAAAGGGGGATATGTCTACAAGCTACAACGGTTCAACTTATTCTGACAGAAAAGAGGAAAAGAGAAGGGCAGAAAACAGTGATGTTAGGGCATCAGTAAAAGAGCAAGTGGATGAAGTGGGAAGAGCTCTTTACCTAGGAAAGTTGCAAGGCAGTTCTGGCAGCTTAAGTTTTCCTCTTGCACCAGAAAATCAGAAGGAAGAGTTTCCTAGGCTTCCTCCTGTAAAGATAAAGTCAGAAGATAAGCCTTTTACTTTTAATTGGGGGGAGAAGTTTGAGTGTGATGGACTTGCTGTGAAACTCGCTGGTGCTGACAACACCTTACTTATTGGGTCATATCTGGATGTCCCTATTGGACAAGAAATTAAAAATACAGGTGTGAGGAAGGCTATAGGGGGCAGTTGGTTGTCTGTAAGTCATGGGATTACAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGGTTGTGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGATGATGAAGATGTTGGGTACACGAGACAACCTATCGAGGATGAGGCCTGGTTTTTGGCACACGAAATAGATTACCCTAGTGACAATGAAAAGGGGACTGGGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTCTCTGGTGAGCAATATATTCTACCAAAAAATGTTGAGCCGGTCACTGCTTCAGATGATCCTATTGGTCTAACAATTACTGAAATGTATGGAAGAACTAATGGTAATGATGTAATGCCTCAATATGATAGACAATTGATGGATGTTGAAGAACTGAATCTGATGCATATGGAACCTGTCAGGCAGGGCTTTGTCACTCACAAAAATGATCTCATCATGATGGGAGATGGGAAGGTTCTGAATCATAGTGCGAGGTCACGAATTGAGGACATGGAAGATGATCAACATGGTTCAGTTAGATCAATTGGGGTGGGGATCAACAGTGATGCTGCTGATATTGGCAGTGAAGTGCATGGAAGTTTGGTTGGTGGTAGCAGTGAAGGGGATTTAGAATATTTCCGTGATCATGATACTACTACACACAGTTTGGATAAGAATTCTATTAACAAATCATTCAAAAATAATAAGAAAAATGACAAGACTGAGTCAAATAAATATGTCATTGACAGTGATAAAGATGCATGCTCACAGATAAAAGCACATACTGATGGGAACTTCTCATTTCCCCAATCTCTTAGAGATAGCCAGATGATTCATGCTGGCTCCAGTAAGACCCTATGGTCGAGTAATTGTAATGTAGAAGAAGCAGATGACTGTATTAATGCATTTGTGGGATCTGATGACATGCTTACTTCATGGAAGAGGAAGAGTAGTGATTCTTTGCCTGTTAAAAGTTCTAGGGATGAGAATAATGCTATTGCGGTAAGATCCAGAAACTCTTCTCCAACTACAGTCTCGAATTATGGGTATACTGATGGAGAGCTTGTCAAACTAGAAAAGGATGAAAAAGTTAGCATTGTAAGGGAAGATGATCTAGGTGCATCACTAGAGGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTACTAGCTGGGCGCTATCATGTCACTGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTCTATTATAGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAGAGCTATAGCAGATGTGAGGTTAAGGTCATTGATCTCGGAAGTAGCTGTTTTGAGACAGATCACCTTTGCTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGACATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTTCTCTTCCAAAATGATTCCCCTGCGACATTACTTGCTCGGGTGATTGGGATCATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGGACGGGATACATATAAGTACTTCACAAAAAATCATATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCTAAAAAGACATCATTGAGGCATAGATTACCGATGGGGGACCAAGGCTTCATCGACTTTGTTGCTCATTTGCTTGAGGTTAACTCGAAGAAGCGGCCTTCTGCATCCGAGGCGCTGAAGCACCCATGGTTGTCATACCCTTATGAGCCAATATCATCTTGA 3516 0.4107 MADTNSVEVILDFLKRNRFTRAEAALRSELSNCSDVNGFLQKLTLDEKDLHGGLQNDKGKPVVENQGLDSRDSVEVSKELIVKEIECGTGKNASESKWKTVAPTGESNKSNEVVGTSDKNFTFSKSSEDSVLDLYSWKFNASNGPVEPYQNDGGSRPNNDLKAPVSQQSKYQTSEALDATNRNVKSREENNVPAEKTSSWLGNIGKASTEPKYDLMQSKEPREIDRQFKFNASSLKENLTDNVLSRTDENVNSSTDLWKDCSVKTVFPFSKGDMSTSYNGSTYSDRKEEKRRAENSDVRASVKEQVDEVGRALYLGKLQGSSGSLSFPLAPENQKEEFPRLPPVKIKSEDKPFTFNWGEKFECDGLAVKLAGADNTLLIGSYLDVPIGQEIKNTGVRKAIGGSWLSVSHGITEDTSDLVSGFATIGDGLCESVDYPNEYWDSDEYDDDEDVGYTRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTASDDPIGLTITEMYGRTNGNDVMPQYDRQLMDVEELNLMHMEPVRQGFVTHKNDLIMMGDGKVLNHSARSRIEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLVGGSSEGDLEYFRDHDTTTHSLDKNSINKSFKNNKKNDKTESNKYVIDSDKDACSQIKAHTDGNFSFPQSLRDSQMIHAGSSKTLWSSNCNVEEADDCINAFVGSDDMLTSWKRKSSDSLPVKSSRDENNAIAVRSRNSSPTTVSNYGYTDGELVKLEKDEKVSIVREDDLGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVLAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGLLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNSKKRPSASEALKHPWLSYPYEPISS* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1396 1171 MobiDBLite consensus disorder prediction 145 196 - -
Gso9g1396 1171 Gene3D Phosphorylase Kinase; domain 1 854 941 - -
Gso9g1396 1171 Coils Coil 812 832 - -
Gso9g1396 1171 SMART serkin_6 860 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1396 1171 MobiDBLite consensus disorder prediction 277 298 - -
Gso9g1396 1171 ProSiteProfiles Protein kinase domain profile. 860 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1396 1171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 986 998 IPR008271 GO:0004672|GO:0006468
Gso9g1396 1171 PANTHER - 2 1169 - -
Gso9g1396 1171 MobiDBLite consensus disorder prediction 145 180 - -
Gso9g1396 1171 MobiDBLite consensus disorder prediction 474 504 - -
Gso9g1396 1171 Pfam Protein kinase domain 860 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1396 1171 CDD PKc_DYRK_like 860 1162 - -
Gso9g1396 1171 MobiDBLite consensus disorder prediction 283 298 - -
Gso9g1396 1171 Gene3D Transferase(Phosphotransferase) domain 1 914 1162 - -
Gso9g1396 1171 SUPERFAMILY Protein kinase-like (PK-like) 849 1164 IPR011009 -
Gso9g1396 1171 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 1169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1396 Gso-Chr9 37906497 37915285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1396 859 1157 MAP Kinase Gene Family AT5G19010 29.968 2.71e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gso9g1396 Pkinase 7.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1396 - - gmx:100798608 2325.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1757 16 38167204 38175965 Gso9g1396 9 37906497 37915285 GST
Gso5g2119 5 44106060 44117812 Gso9g1396 9 37906497 37915285 PCT
Gso8g0480 8 4411503 4422155 Gso9g1396 9 37906497 37915285 PCT
Gso9g1396 9 37906497 37915285 Gso5g2119 5 44106060 44117812 PCT
Gso9g1396 9 37906497 37915285 Gso8g0480 8 4411503 4422155 PCT