Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1390 ATGCACATTCCAACGCTCCAACATATCATTCCAACAACCAATAGACTTGCAATCCAATTCCAACTTTCTTTCAAAAAATTCGTCTTCACAATACAGATTTTCACTCTTACAGCTCTCAGTTTGAATTATCAAGGAAGCATGGCTAATTTTGAAAATGACAAGCTGCTGATGCTCTCAGATACAGATGCACAACCATATGATGAACCCTTGGATGCTAAATTTCGAAGGACAGTAACCAGGACACAAAGTGCATCAATTTCTATTTCTATGAGTTCCTTGGAGTCATATGATAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTTTATGCAGATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCCTCTGCAGAAGCATATTGTATCTGGAAACAAAGCAGAGGAGAGAAAGACAGATAATTTTGCTACTCTCCGTGACACAGGTTCAAATTACTGGAATAATGACTATGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACCTACTTCAATGCTTCTCAGCAAAGAAATCCAAAACCTTCGACTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGAAAACTTCTTTCTTTCTGCTATTCGTATGTTCCTGGAGTTATGAACCCTCATGCTAAAGTCGTACAAAAATGGAACAAATTTTTGGCCATTTTTTGCTTGATTGCTATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGTGGAGAAGGATAATAAATGTATTGTTATCAACTGGCCTTTGACAACAGCACTTGTTTTATTTAGATGTGTGACTGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGATTTGGTTGACCATCCAAAGAGGATTGCTCTTCATTACCTAAAGGGTTATTTCCTTATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGATATTGTTTGTCCTACCAAATTCCTTGGAGGGAGCAAATTATGCCAAGAATCTTCTCCGTGCAGCGATCTTAGTGCAATATATCCCCAAGTTATTCAGGTTTCTGCCACTGCTAATTGGCCAATCTCCCACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAACCTTCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAACCAGTGTCTGCGGGATGCCTGCCATAGTTCCAATATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGCCATGGAAAGAATCAGCCTAGCTTAAGATCAGATCAGTGGATCAACAATACCGATGCCGTTGCTTGTTTGGATCCCTCTCCTGATGGTTTCTCTTACGGGATTTATGAGAATGCTGTACCACTTACTATAGAAACTAACATTGTCAATAAATATGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGTAATCTAGAACCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGGCCATCATAGGAATGGGACTCTTGCTTTTTGCAATTCTTATTGGAAACATACAGAACTTTCTACAGGCTCTTGGGCGGAGGAAGCTGGAAATGCAACTTAGAGGCCGGGATGTTGAGCAATGGATGAGCCATCGGCGCTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTTCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAACCTATCTTAGATGCCATTTGTGATAGACTAAGACAAAAGACATACATCAAAGGAAGTAAAATTCTAAGTCAGGGTGGTCTAGTAGAGAAGATGGTATTCGTGGTGCGTGGCAAATTGGAAAGCATTGGAGAAGATGGAACTAGAATTCCTCTATCTGAAGGGGATTCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTTAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCGGACATTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTTCAAGGAGCTCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCACCATCAGATTAA 2439 0.4051 MHIPTLQHIIPTTNRLAIQFQLSFKKFVFTIQIFTLTALSLNYQGSMANFENDKLLMLSDTDAQPYDEPLDAKFRRTVTRTQSASISISMSSLESYDKETSLVGHTGPLQSKRKTPFMQMSGPLYATTGTGNPLQKHIVSGNKAEERKTDNFATLRDTGSNYWNNDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKPSTRWDPKFHNALYGDAKSFVRKLLSFCYSYVPGVMNPHAKVVQKWNKFLAIFCLIAIFVDPLFFFLLYVEKDNKCIVINWPLTTALVLFRCVTDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKRIALHYLKGYFLIDLFVVFPLPQIMILFVLPNSLEGANYAKNLLRAAILVQYIPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRDACHSSNIPGCMKFIDCGRGHGKNQPSLRSDQWINNTDAVACLDPSPDGFSYGIYENAVPLTIETNIVNKYVYSLFWGFQQISTLAGNLEPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICDRLRQKTYIKGSKILSQGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDSCGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDIEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPSD* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1390 812 SMART cnmp_10 644 779 IPR000595 -
Gso9g1390 812 CDD CAP_ED 644 760 IPR000595 -
Gso9g1390 812 Gene3D - 252 569 - -
Gso9g1390 812 SUPERFAMILY cAMP-binding domain-like 572 763 IPR018490 -
Gso9g1390 812 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 809 - -
Gso9g1390 812 Pfam Ion transport protein 252 571 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso9g1390 812 ProSiteProfiles cAMP/cGMP binding motif profile. 644 712 IPR000595 -
Gso9g1390 812 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 50 809 - -
Gso9g1390 812 Gene3D Helix hairpin bin 572 636 - -
Gso9g1390 812 Gene3D Jelly Rolls 642 766 IPR014710 -
Gso9g1390 812 SUPERFAMILY Voltage-gated potassium channels 245 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1390 Gso-Chr9 37824998 37833497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1390 51 722 Ion Channels AT3G17700 61.267 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1390 K05391 - gmx:100795427 1639.4