Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1389 ATGGCTCATTTTGAAAAAGATGAGGTGCCAATGCTGTCAGAAACACATGCTCAACTATCTGATGAAGTTGTGGATTCTAATTTCCGAAGGCTTGTATCTAGGACACAAAGTGCTTCAATTTCTATTCCTATGGCCTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACCAATGGAACTGGAAATCTTTCACGACAGAATATAGTTGCGACACGAACCAAAGTAGTGGAGAGCAAGACAGAAAAGTTTTCTACTTTCAATGGCACAGATGAAAATCATTGGGATAACGACTACAATAGAAAGAATGAGCACTTAATGAGGTCTGGGCAACTTGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTTCTCAGCCAAGAGCCCGGAGAACTTCAGCTATATTTGATCCCAAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCAAGGGTAGTAGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCTCTTAATTATCTGAAGGGTTTTTTTTTCATTGACCTATTTGTTGTATTGCCTCTACCTCAGATAATGATATCATTTGTCCTACGAAAGTACATGGGAATATCAGGAGCAAATTTTGCTAAAAATCTTCTGCGTGCAGCAATCCTTTTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGTCAGTCTCCTACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTTTTTTTTATGCTATCTGGCCATGTTGTTGGTTCTGGCTGGTACCTCTTTGGTCTGCAGAGGGTTAATCAATGCTTGCGAAAGGCCTGCCAACATTCTAATATTACTGGATGCTCAGCATTTATTGATTGTGGCAGTGACCGTGCATCTGACCAGTCAGAACTGTGGAACAAAAATGTAAATGCCACTGCTTGTTTGGATTCCAGTTCCGGTGCTTTTCCATATGGGATCTATGTACATGCTGTACCACTTACTATAGAAACTAGGGTGGTCAAAAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTGAGTGGGAAGTACTTTTTACAATGGCCATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCCGAAGATCTAAGAAGGAGAGTACGTCAGGCTGAACGATATAGTTGGGCAGCAACAAGGGGAGTGAATGAAGAAATACTTCTGGAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCAAATTTGTTAAAAAAGTTCGAATCTTTTCCCTGATGGATGAGCCTATCTTAGATGCCATTTGTGAGAGACTAAAACAAAAGACGTACATCAAAGGAAGTAAAGTTTTGAGTCAGGGTGGTCTTGTAGAGAAGATGGTCTTTGTTGTACGTGGGAAATTGGAGAGCTTTGGAGATGATGGAACTATAGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCCGTAAGCACAGATGGTAAAAAATTAAGGGTTCAAGGGCAGAGGTTTCTGAGCAACAGGACAATAAGATGCTTAACAAATGTGGAGGCATTTTCACTGCACGCTGCAGACCTTGAGGAACTCACAATTCTTTTCACAAGATTCTTGCGGAACCCTCATGTTCTAGGAGCACTAAGGAATGTATCACCTTATTGGAGATCCCTTGCAGCAAACCGTATTCAAGTTGCATGGAGATACAGGAAGAAGCGTCTAAGTCGTGCTAATACCTCGCAATCAAATCAAACATTGATGTCATAG 2022 0.4139 MAHFEKDEVPMLSETHAQLSDEVVDSNFRRLVSRTQSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATNGTGNLSRQNIVATRTKVVESKTEKFSTFNGTDENHWDNDYNRKNEHLMRSGQLGMCNDPYCTTCPTYFKASQPRARRTSAIFDPKFRLAYVSPESRVVGAGDLVDHPKKIALNYLKGFFFIDLFVVLPLPQIMISFVLRKYMGISGANFAKNLLRAAILLQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLFFMLSGHVVGSGWYLFGLQRVNQCLRKACQHSNITGCSAFIDCGSDRASDQSELWNKNVNATACLDSSSGAFPYGIYVHAVPLTIETRVVKKYVFALFWGFQQISTLAGNQTPSYFEWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEILLENLPEDLQTDIRRHLFKFVKKVRIFSLMDEPILDAICERLKQKTYIKGSKVLSQGGLVEKMVFVVRGKLESFGDDGTIVPLSEGDACGEELLTWYLEHSSVSTDGKKLRVQGQRFLSNRTIRCLTNVEAFSLHAADLEELTILFTRFLRNPHVLGALRNVSPYWRSLAANRIQVAWRYRKKRLSRANTSQSNQTLMS* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1389 673 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 167 666 - -
Gso9g1389 673 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 139 - -
Gso9g1389 673 Gene3D - 177 425 - -
Gso9g1389 673 Gene3D Jelly Rolls 498 622 IPR014710 -
Gso9g1389 673 SMART cnmp_10 500 635 IPR000595 -
Gso9g1389 673 SUPERFAMILY Voltage-gated potassium channels 191 428 - -
Gso9g1389 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 139 - -
Gso9g1389 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 167 666 - -
Gso9g1389 673 SUPERFAMILY cAMP-binding domain-like 428 622 IPR018490 -
Gso9g1389 673 Pfam Ion transport protein 184 428 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso9g1389 673 CDD CAP_ED 500 616 IPR000595 -
Gso9g1389 673 Gene3D Helix hairpin bin 427 492 - -
Gso9g1389 673 ProSiteProfiles cAMP/cGMP binding motif profile. 500 568 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1389 Gso-Chr9 37808438 37818340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1389 167 578 Ion Channels AT3G17700 69.976 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1389 K05391 - gmx:100794895 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1748 16 38089742 38098305 Gso9g1389 9 37808438 37818340 GST