Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1384 ATGGAGATGCAGGACCAAATAGAAAGCACAAGATCAACCATATTTGGCTCAGCTAGTAACATCCATTCCAATGCTGAAAAGCAGGCCGAAAATGTTGCTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGAGGTCAGTGATGAGGGTTCTATACAACCAATTAACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTGCATCCATATCCCCGTAAATCAGTTAATTCTTTCAGAGGACCCACCATACCAAATGAAACAGAAATATCTCCATCTACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCAACCTCGGTGCTATCTACAGTTGGTTCGGAAGCATTTGGGTCTCAATTTTCAGAGCAGACTAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTATCACCTGTTGAAAAGGAAAATGATTGCATGACATCCAAAGAATCTGAGGAGGAAGAGAAAGCATCACCAGCTTCACGTCCTTTATCCACTGTTTCTAACCCAAAAATGTGCATGAAACCTGAGTTTAGTTCCAAGGAGATAGAAGATGCTACTGATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTAGGTAATCAGAAGTCACTGAAGATAGATGATGATGGTAAGCCGATAACTGTGAAGTCCGATGAAGTAGATGATGTTGAGAATGAGAAGCTTGGCCAATCAGGAGAATCCAAGCAAGTAGATACACAATTATCACTCGGCGTGGTTAGTGGTAACTGGCCTATAACACCCGATGCTGATGGAGCTAATGTGACCAGCATAGAGCCCCCAAAGGAGAACCTATGCTTCAGTGAATCTGCACCTGATGCATTTTTTCCGCAGTGGAGTTTGTCCCAAGGCCTTCCACCTTTCTACCTGAGGCCATGCAATCAGGTCCTAAATCCCTTGCCTCTTAGGCCCTCCTCTTTGAAAGTAAGAACAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTCTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTTTCAAAAATATCACGAGGAAGGAGCTGCACCCCAGAAGAAGCCTGCAAGGGGATTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGGACATTCTTTTATTGTTGCCATGGAAGAGAGGGAGGGGCAACGAGCACGTGTGTGCTCATAG 1401 0.4397 MEMQDQIESTRSTIFGSASNIHSNAEKQAENVAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEVSDEGSIQPINIPPPRPKRKPLHPYPRKSVNSFRGPTIPNETEISPSTNLLVAEKDTPSPTSVLSTVGSEAFGSQFSEQTNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKESEEEEKASPASRPLSTVSNPKMCMKPEFSSKEIEDATDMPQTTSIKLFGRTVSMVGNQKSLKIDDDGKPITVKSDEVDDVENEKLGQSGESKQVDTQLSLGVVSGNWPITPDADGANVTSIEPPKENLCFSESAPDAFFPQWSLSQGLPPFYLRPCNQVLNPLPLRPSSLKVRTREEESCCTGSNTESVCDMENQGKNSDAVDSKFQKYHEEGAAPQKKPARGFVPYKRCLAERDGHSFIVAMEEREGQRARVCS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1384 466 SMART sant 45 93 IPR001005 -
Gso9g1384 466 ProSiteProfiles Myb-like domain profile. 41 91 IPR001005 -
Gso9g1384 466 MobiDBLite consensus disorder prediction 199 233 - -
Gso9g1384 466 PANTHER SWI/SNF COMPLEX-RELATED 3 453 - -
Gso9g1384 466 CDD SANT 48 91 IPR001005 -
Gso9g1384 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 95 IPR017930 -
Gso9g1384 466 MobiDBLite consensus disorder prediction 101 143 - -
Gso9g1384 466 MobiDBLite consensus disorder prediction 1 51 - -
Gso9g1384 466 ProSiteProfiles SANT domain profile. 44 95 IPR017884 -
Gso9g1384 466 SUPERFAMILY Homeodomain-like 40 94 IPR009057 -
Gso9g1384 466 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 44 93 IPR006447 GO:0003677
Gso9g1384 466 MobiDBLite consensus disorder prediction 1 27 - -
Gso9g1384 466 MobiDBLite consensus disorder prediction 204 220 - -
Gso9g1384 466 Gene3D - 48 95 - -
Gso9g1384 466 PANTHER PROTEIN REVEILLE 7-RELATED 3 453 - -
Gso9g1384 466 Pfam Myb-like DNA-binding domain 46 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1384 Gso-Chr9 37700324 37704818 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso9g1384 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1384 - - gmx:100101861 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1744 16 37998191 38002632 Gso9g1384 9 37700324 37704818 GST