Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1365 ATGAGCGGAAAAGCCTCCGTCTCTAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGGTACTGTTGATCATTTTGGCTTGCTTTCCATCCATGATAGTAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA 732 0.4303 MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNKSPASGAKSAIQNRRLSLEESILVKHMAQIRSPITRSHEGSSDLQKKNSPPPIRRPSASFDFDYSRGKNNGTVDHFGLLSIHDSKQDFSTTPPSWTTFD* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1365 243 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gso9g1365 243 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gso9g1365 243 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gso9g1365 243 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 243 IPR044520 GO:0005096
Gso9g1365 243 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Gso9g1365 243 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Gso9g1365 243 MobiDBLite consensus disorder prediction 175 208 - -
Gso9g1365 243 MobiDBLite consensus disorder prediction 178 192 - -
Gso9g1365 243 CDD ArfGap 19 119 - -
Gso9g1365 243 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 243 - -
Gso9g1365 243 SMART arf_gap_3 5 132 IPR001164 GO:0005096
Gso9g1365 243 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Gso9g1365 243 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1365 Gso-Chr9 37449323 37453260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1365 22 119 C2H2 Transcription Factor Family AT4G05330 49.038 8.93e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1365 K12486 - gmx:100802691 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1727 16 37824578 37828788 Gso9g1365 9 37449323 37453260 GST
Gso8g0484 8 4463903 4472185 Gso9g1365 9 37449323 37453260 PCT
Gso9g1365 9 37449323 37453260 Gso8g0484 8 4463903 4472185 PCT