Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1361 ATGTCTTCTGCCGGCGGCGACAGCGGCGGCAGCGCTACTTCCGGCGAGCCTCGCCAATACTTCTGCCACCAGTGCAACCGCACCGTCTCAATTTCCCCTTCTCCCTCCTCCGATCTCCTCTGCCCCACTTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCAATCCCCGACCCTAACCCTCCTAATCCTTTTTTCTCCGACTTCCCCCTCGGCGGCGCCGCCACCATTCCCCTCGTCCTCCCCGGCGCTGCCACCTCCCCTCCCTTCGGCGATCTCTCAGCCCTCTTCGGCGACCGATCCGACGCTGCCGCCTCCGATGCCTTCAACCCCCTCGTCTTCCTCCAGAACTACTTCCAAACCCTAAGAGCCGGCGGGGGCGGCAACCTCCAACTCGTGATCGAGTCCGGCGACCCCGGCGGAGTCTTCCGCTTCCCCGGCGTCACCCACGGCGACTACTTCTTCGGGCCGGGCCTCGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCTAACCGCTACGGCACCCCGCCGGCCTCCAAGTCCGCCGTCGAGGGCCTGCCGGACGTCTCCGTCACCGAGGAGCTGCTGGCGTCGGATTCCTCGCAGTGCGCCGTTTGCAAAGACACCTTCGAGCTCGGCGAGACCGCGAAGCAGATCCCCTGTAAGCATATATATCACGCAGATTGCATTTTGCCGTGGTTGGAATTGCATAATTCTTGTCCAGTTTGTCGGTATGAATTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCGTCGTGGTGGCGGTGGCGGTAGTGGTGGTGATGGTGCCGGAAGTGGGGCAGCTCCACAAGTGAATTGGAACATGGCATTGGGGCCCGCTGGTGGTTCTGCGGATTCATCCGGTGGCGGTGGCAGTGGCGGTGATAGTTCGCAGAGGAGAAGATTTAGGGTGTCTTTGCCGTGGCCGTTTAGGCAATTTGCCGAGACAAGTAATGTTGGGAGTGCCAACAATGATAGCAACAACAACAACAACAACAGCAATAGCAATAGTGGTAGTAGCGGAAATAATGGTGGGCAATCGAACTCTGGAAACCGGGGGAATCAGAATTTTGACTCGGAGACCAGACAGGAAGATCTCGATTGA 1131 0.5942 MSSAGGDSGGSATSGEPRQYFCHQCNRTVSISPSPSSDLLCPTCNGGFLEELEIPIPDPNPPNPFFSDFPLGGAATIPLVLPGAATSPPFGDLSALFGDRSDAAASDAFNPLVFLQNYFQTLRAGGGGNLQLVIESGDPGGVFRFPGVTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRARRGGGGGSGGDGAGSGAAPQVNWNMALGPAGGSADSSGGGGSGGDSSQRRRFRVSLPWPFRQFAETSNVGSANNDSNNNNNNSNSNSGSSGNNGGQSNSGNRGNQNFDSETRQEDLD* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1361 376 CDD RING-H2_RNF126_like 203 245 - -
Gso9g1361 376 MobiDBLite consensus disorder prediction 255 308 - -
Gso9g1361 376 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Gso9g1361 376 SUPERFAMILY RING/U-box 188 251 - -
Gso9g1361 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 11 330 - -
Gso9g1361 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 330 - -
Gso9g1361 376 MobiDBLite consensus disorder prediction 325 366 - -
Gso9g1361 376 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Gso9g1361 376 MobiDBLite consensus disorder prediction 325 376 - -
Gso9g1361 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 251 IPR013083 -
Gso9g1361 376 SMART ring_2 204 244 IPR001841 -
Gso9g1361 376 Pfam Zinc finger, C3HC4 type (RING finger) 203 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1361 Gso-Chr9 37416826 37425638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1361 162 260 C3H Transcription Factor Family AT5G15820 54.545 5.43e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1361 - K11982 gmx:100784504 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1717 16 37692704 37696898 Gso9g1361 9 37416826 37425638 GST