Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1336 ATGGAACAAAATGCGTGCGAGGAATTGTCGAAAATTGCTTCGGATTTCAAGTGCGAGAAGAAGGTTCTCGAAACAGTTGATGAATCAATCGTATGCCCCACTCCACAGAAGAACGAGGAACCCTTAATCGTTAAATTCAGAGAGGGACAAACCAACCTTCCTGAAAAATACTCTGCACTTGTAGATTTGTTTGGTCACACAAGCTGTTCACTCAGGTTGCTGCGTCTGTGTAAAAAGCCTCCAACTTTTCAAAATGTTTGCCGACAGGTTGAAGTTCTTTCGAAGAGGGAATTCTCCCATGCCCATCTTGCGCAGATGAAGTATATACTCCCTAAAAGTGTGTGTATAGATAAGGTGCTTGTTCATGATAAGAAAAGCTTGTGTATGGTGCCTGATATGAAGATCACGTTGAGATTTGAGGTTGTGAAAGATTGCTCTGGAGAATCTGATGATCTGGCTCTTCGACGATATTTTAAATCTAAGCTGATTGATTTCTTTGATATGCATCCTGAGGTTGCTGACATTCCAGAGGCCCCACTGCCAGAACCCTTTGGCAAAAAAACTTGTAGATTGAATTTTGAAGAATTTACTGGCCAATCCCCACATGTAAATTCTTCAACGGAACTTTTGTCAATTTCCAATCAAACTGAAATGTTGCCAGAGCAATTGCAACTGTATCCATCTTTCCGTAGACACTTTTCTAGGAAGAATAATACCGACCAGGCAGAAAAGGCTCAATGCTTTTTACCCACAAAAACTTCTCCATCATCTCATGCATCTGATTGTCTGGATAATGAAGAAAGTGAAAAAACACTGCAGAAAGAATGTGTACCATTATTTGATGGGGTGGCTAATCCTATTACTGAAAGAGGGCACCAGAAGGAATCATTTTCTATGTCTTTGCAGCCTAGCTTTATTAATACACCAGTACAGATGATCCGCCCTCCACATTCTGTTACGTGCAGTAATTCTGAAAGCCCGGATATGAAAAATATCTCCTGTGCTGCTGATAGTTTTATTGCAGAGACACCTGCCCAGTCAGCACCTGCAAGATTATTGCCCATTTCTGATGTTAAGCTTCAGGACATGCCTACCCAAAAGTCAACATCATCTCATAAGCCAGCTAAAAGAGTGCTTGACTTTTCACTCATGGAGGACAATGATGGCTTGGGCATTGGAGTAGACAAGTTAGAATCTAGCAGAGCTCTGCATGAATTTGATAGCTTCCCTGAATCTAGCAGAGGATGTTATGAGGATTGCAATTCTTTTGGGTCTGTTTCTGCACCTCAGGAGGCAGAAGAGAGCCTCAAGCAAGCTGATTTAGATACACAGCATAAAAAATCTTCACCATTGCTGGATCTGGTTAATGTGATACACTCTATATTTCAATCTGTCCAAAGAATTCCAATCACCAAAGAGGAGCTCCTGCATAAGATACTTGTGAACACTTTGGATTTTGTTGAGATTAGAGCAGTTGAAGAACAAATTGAGTCTCTAGAAAAGTTGGTGCCAGATTGGATCTGCAAGAAATTGGTTGCTACTGGAGATACTATGTACTGCATCAATAAAGTGTCGGATTTAGACTCTGTACGATCACGGCTTTCCAGCAACGTCGTTTGA 1620 0.4117 MEQNACEELSKIASDFKCEKKVLETVDESIVCPTPQKNEEPLIVKFREGQTNLPEKYSALVDLFGHTSCSLRLLRLCKKPPTFQNVCRQVEVLSKREFSHAHLAQMKYILPKSVCIDKVLVHDKKSLCMVPDMKITLRFEVVKDCSGESDDLALRRYFKSKLIDFFDMHPEVADIPEAPLPEPFGKKTCRLNFEEFTGQSPHVNSSTELLSISNQTEMLPEQLQLYPSFRRHFSRKNNTDQAEKAQCFLPTKTSPSSHASDCLDNEESEKTLQKECVPLFDGVANPITERGHQKESFSMSLQPSFINTPVQMIRPPHSVTCSNSESPDMKNISCAADSFIAETPAQSAPARLLPISDVKLQDMPTQKSTSSHKPAKRVLDFSLMEDNDGLGIGVDKLESSRALHEFDSFPESSRGCYEDCNSFGSVSAPQEAEESLKQADLDTQHKKSSPLLDLVNVIHSIFQSVQRIPITKEELLHKILVNTLDFVEIRAVEEQIESLEKLVPDWICKKLVATGDTMYCINKVSDLDSVRSRLSSNVV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1336 539 CDD Cdt1_m 47 186 IPR014939 -
Gso9g1336 539 SUPERFAMILY "Winged helix" DNA-binding domain 47 184 IPR036390 -
Gso9g1336 539 Gene3D - 439 539 IPR038090 -
Gso9g1336 539 PANTHER EXPRESSED PROTEIN 4 536 - -
Gso9g1336 539 PANTHER DNA REPLICATION FACTOR CDT1 4 536 IPR045173 GO:0003677|GO:0030174|GO:0071163
Gso9g1336 539 Pfam DNA replication factor CDT1 like 53 116 IPR014939 -
Gso9g1336 539 Pfam DNA replication factor Cdt1 C-terminal domain 432 507 IPR032054 -
Gso9g1336 539 SMART CDT1_2 53 182 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1336 Gso-Chr9 37124492 37133388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1336 53 171 Core DNA Replication Machinery Family AT2G31270 40.984 1.03e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1336 K10727 - gmx:100794715 1046.96