Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1333 ATGGCTTTGCAATCACGTTCCTCTTCCTTGAGCTACGATGTATTCCTCAGCTTCAGAGGGGAAGACACACGTCATGGTTTTACTGGCCATCTCTACAGCGCTCTTCATAGCAAGGGAATCCACACTTTCATCGATGATGAGGGTCTTCAAAGAGGAGAGGAAATAACACCAGCACTTGTGAAGGCAATTCAAGAGTCTAAGATTGCCATCATTGTGCTCTCTATTAACTATGCTTCTTCATCATTTTGTTTACATGAACTTGCAACTATACTTGAGTGCCTTATGGGGAAAGGTCGGTTGGTTTTGCCGGTTTTTTATAAGGTAGATCCTTCTCACGTACGTCACCAGAATGGTAGTTATGAAGAGGCATTGGCTAAGCATGAGGAGAGGTTCAAAGCTGAGAAGGAGAAGTTGCAGAAATGGAAGATGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTACCATTTCAAAGATGGAGAAGGATATGAATACAAGTTTATTGAGAAGATTGTTGAGCAGGTCTCTAGGGAAATTAATCCTGCTTGTTTACATGTTGCGGATTACCCAGTTGGACTAGAGTGGCAAGTGCGGCAAGTAAGGAAGCTTTTGGATATTGGATCTGATGATGGTGTCCACATGATAGGGTTTCACGGAATGGGTGGGGTAGGAAAATCAGCACTTGCTCGAGCTGTCTATAATAATTTAATAATTGATGAGAAGTTTGACGGTTTTTGTTTTCTTGAAAATGTGAGAGAAAAATCAAACAAGGATGGGTTAGAACACCTCCAAAGAATCCTTCTTTCAAAAATACTAGGAGAGAAGGACATCAACCTAACAAGTAAGCAACAAGGAATTTCAATGATACAGTCTAGGCTTAAGGGAAAGAAGGTTATCTTGATTCTAGACGATGTTGACAAGCACGAGCAATTACAGGCAATTGTTGGTAGACCAGATTGGTTTGGTCCCGGCAGCAAAATCATCATCACAACTCGGGACAAACAATTGCTAGCACCTCATCAAGTTATTACAACATATGAGGTGAAGGAATTGGATGAGAACGATGCTCTTCAGTTACTTACATGGAAAGCTTTTAAAAAGGAAAAAGCTGATCCAAATTACGTGGAGGTCTTGCAACGTGCAGTAACTTATGCTTCTGGCCTTCCACTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTACAAAAAGTATAAAAGAATGGGAATCTGCTTTAAAAAAATACAAAAGAATTCCCAAAAAAGAAATTTTAGAAATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAAAGTGTTTTTCTTGACCTTGCTTGTTGCTTCAAAGGATGTAAATTAACAGAGGCTGAAGTTATACTTCACGCTTTTTATGATGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAGTGGTTAAATGGAATGGTATAATTAACATGCATGACTTGATTCAGGACATGGGCAGACGAATTGACCAGCAAGAATCCCCGAAAGAGCCAGGGAAGCGCAAGAGATTATGGTTATCAAAAGATATAATTCAAGTTTTAGAAGACAACTCCGGAACCAGTAAAATTGAAATAATATGTCTGGATTTCTCCTCATCCGAGAAAGAAGCTATAGTAGAATGGGACGGAAATGCCTTCAAAAAGATGAAAAATCTTAAAATACTTATTATTAGAAATGTAAAATTTTCCAAAGGTCCCAATTATTTTCCAGACAGTTTGATTGCACTGGAATGGCACCGGTATCCTTCAAATTGTTTACCGTCTAATTTTAATTCAAACAAACTTGTCGTGTGCAAGTTACCTGACGGTTGCTTTACGTCAATTGGATTCCATGGCTCACAGAAGAAGTTCAGGAATATAAAGGTTTTGAAGTTTGACAAGTGCAAATTTTTATCACAGATACCTGACGTATCTCATCTCCCAAGTTTGGAGGAACTTTCATTTGAACGATGTGACAATTTAATTACAGTTCACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAGTGCCGAAGGTTGCAGCAAGCTGAGGACATTTCCACCTCTCAACTTGACCTCTCTTGAAAACCTTCAACTTTCATATTGTTACAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGGAAAACATACGGGGACTTGTTTTGAATGACCTTCCCATAAAAGAATTACCAGTTTCATTTCAAAATCTTATTGGACTGCAATATTTAAACTTATCATTTAGAAATTTTCAGTTACAAAGTAGCATTTTCACGATGTTTAACCTGAATAAATTTAGTGCTCAAAATTGCAAGGGGTGGCAATGGGTAAACTCAGAAGAGGGTGAAGAAAACATGGGCTCGATATTATCATTAAAGATCGGTGAATTTGATGTCCAGTATTGCGACCTGTATGATGATTTTTTTTCAACAGGTTTCACACAGTTTGCTCATGTGGAAACTTTATGCCTAGCCGGCAATAATTTCACATTCCTTCCTGAATGCATAAAAGAATTTAAATTGTTACGCTATCTTCTTGTGAGTAATTGCAAGTATCTTCAGGAAATTAGAGGGGTTCCACCAAAATTAACATCCCTCCAGGCAATAAACTGTATATCTTTGTCTTCCTCGAGTTCAAGCATGTTCTTAAATAAGGAACTGTACGCTGAAAAAATTGACTTTTGCTTTACGGGAGCAACAATTCCAAAGTGGTTTAATCAGCAAAGCAGGGGGCCTTCAACTTCTTTTTGGTTTCGTAACGAGTTCCCTGACAGAGTTCTTTGTCTTATTATTACACCACTGGATTTCTGGGATCTAATGGGTTATCCCGCTCCCATGGTGTTCATCAATGGCAAACTTCAAGAATTTAAGTACGAACCAATTGACACTAAATATCCGATGCTGGAATTGGATCATACATATCTCTTTGATCTAAGTTGGGTATGTATCATTGATGATATGTTTGAAGTGGCTTTAGAAAAGGAATGGAACCATGTGGAGGTTACATATGTAGGTTTGATAGAGACCTCACTCGTTAAAGCAACCGGAATCCATATATTCATGGACGAGGAACGCAGCATGGACGACATTCGATTGGACGATCCTTATAGAAAGAGAAAATTAGACCATGTTCTCAACAGTTCTGAATCACAGCAACTTGTTAAAAATCATAGGTTATGGAGTTGGGTTGGTCCTGAAAAAATTAAAATTCTTTTGAGGAACATTGCAGATGGAGCTTTAAGTACTAATGCTGAGAGGAGATATAGGCATAACTCTGTAAACACCTCTTGTCTGAGCTGCGACGCGTTGGAGGAGACATGTCTGCATGCTCTTCGTGATTGTCCAAAGGTGGCTGCCGTTTGGAGAAGTGTGTTACCTTTGGAGTTAGAAGTGACGTTTTTTAATATTGATGAGGTAACACTGTGGCTGGAAAGAAATTTATCTTTTTCAGTTGGTTGGGCAACTATGTTCTGGTTTGCAGTGGAAGTGATATGGGAATCTCGAAACGAGATTGATCTGCTCGATCCAAAGGCTTCTTCGCCCATTTATATGATCATGATGATCATAATTCGTTATGAAGATTTTATCAGAGCCGATCCTTCTCACAAGTTAATGATGAGGGATCATACTCAGCCATGTAGTAGTGATCACCTTTTCAAGTGGAGGCCCCCAGTTGATCCTTGGCTGAAGCTAAACATGGATGGTGCCATCGATCCTTGTTCTAAAACTGCAGCATGTGGAGGTATATTCAGAGACTACAGTGGTAGATTCGTGCTTGGGTTTTCAGTTAAGCTCGATATGGAACATTATTGCTCAATTGATGAAGCTGAAATTTGGGGTGTTTATCATGGTATTAAGATTGCAAGGCAGTATGATTTTGGTAAAATAGTTGTGGAGTCAGACTCGCCGAAAGCTATTAGTTTTGTGCAGGATGGTTGTCCTACATACCAACAGCATAGTTTCCCACTCTGTCATGAGTTGCGAGCTCTAACGTTGTCTGCTACAAATTATTTAGACTGGAGTCTTATATATAGGGAAGGGAACATGGCGGCTGCTTCCTTTGCCAATTTCGGCTTATCCATGAATCAGCGAGCGTGGATTTTTTCTGCATGTCCGACCTTTTGTGCACCTTTTGTAGATGTTTGA 4167 0.3904 MALQSRSSSLSYDVFLSFRGEDTRHGFTGHLYSALHSKGIHTFIDDEGLQRGEEITPALVKAIQESKIAIIVLSINYASSSFCLHELATILECLMGKGRLVLPVFYKVDPSHVRHQNGSYEEALAKHEERFKAEKEKLQKWKMALHQVANLSGYHFKDGEGYEYKFIEKIVEQVSREINPACLHVADYPVGLEWQVRQVRKLLDIGSDDGVHMIGFHGMGGVGKSALARAVYNNLIIDEKFDGFCFLENVREKSNKDGLEHLQRILLSKILGEKDINLTSKQQGISMIQSRLKGKKVILILDDVDKHEQLQAIVGRPDWFGPGSKIIITTRDKQLLAPHQVITTYEVKELDENDALQLLTWKAFKKEKADPNYVEVLQRAVTYASGLPLALEVIGSNLFTKSIKEWESALKKYKRIPKKEILEILKVSFDALEEEEKSVFLDLACCFKGCKLTEAEVILHAFYDDCMKYHIGVLVEKSLIVVKWNGIINMHDLIQDMGRRIDQQESPKEPGKRKRLWLSKDIIQVLEDNSGTSKIEIICLDFSSSEKEAIVEWDGNAFKKMKNLKILIIRNVKFSKGPNYFPDSLIALEWHRYPSNCLPSNFNSNKLVVCKLPDGCFTSIGFHGSQKKFRNIKVLKFDKCKFLSQIPDVSHLPSLEELSFERCDNLITVHDSIGFLNKLKILSAEGCSKLRTFPPLNLTSLENLQLSYCYSLENFPEILGEMENIRGLVLNDLPIKELPVSFQNLIGLQYLNLSFRNFQLQSSIFTMFNLNKFSAQNCKGWQWVNSEEGEENMGSILSLKIGEFDVQYCDLYDDFFSTGFTQFAHVETLCLAGNNFTFLPECIKEFKLLRYLLVSNCKYLQEIRGVPPKLTSLQAINCISLSSSSSSMFLNKELYAEKIDFCFTGATIPKWFNQQSRGPSTSFWFRNEFPDRVLCLIITPLDFWDLMGYPAPMVFINGKLQEFKYEPIDTKYPMLELDHTYLFDLSWVCIIDDMFEVALEKEWNHVEVTYVGLIETSLVKATGIHIFMDEERSMDDIRLDDPYRKRKLDHVLNSSESQQLVKNHRLWSWVGPEKIKILLRNIADGALSTNAERRYRHNSVNTSCLSCDALEETCLHALRDCPKVAAVWRSVLPLELEVTFFNIDEVTLWLERNLSFSVGWATMFWFAVEVIWESRNEIDLLDPKASSPIYMIMMIIIRYEDFIRADPSHKLMMRDHTQPCSSDHLFKWRPPVDPWLKLNMDGAIDPCSKTAACGGIFRDYSGRFVLGFSVKLDMEHYCSIDEAEIWGVYHGIKIARQYDFGKIVVESDSPKAISFVQDGCPTYQQHSFPLCHELRALTLSATNYLDWSLIYREGNMAAASFANFGLSMNQRAWIFSACPTFCAPFVDV* 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1333 1388 CDD RNase_H_like 1238 1363 IPR044730 -
Gso9g1333 1388 SUPERFAMILY Ribonuclease H-like 1235 1370 IPR012337 -
Gso9g1333 1388 Coils Coil 117 144 - -
Gso9g1333 1388 Gene3D Ribonuclease Inhibitor 502 714 IPR032675 -
Gso9g1333 1388 Gene3D - 184 343 IPR027417 -
Gso9g1333 1388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 915 IPR044974 GO:0006952
Gso9g1333 1388 Gene3D - 1236 1372 IPR036397 GO:0003676
Gso9g1333 1388 Pfam NB-ARC domain 195 417 IPR002182 GO:0043531
Gso9g1333 1388 Pfam Reverse transcriptase-like 1239 1364 IPR002156 GO:0003676|GO:0004523
Gso9g1333 1388 CDD AAA 190 332 - -
Gso9g1333 1388 PRINTS Disease resistance protein signature 213 228 - -
Gso9g1333 1388 PRINTS Disease resistance protein signature 291 305 - -
Gso9g1333 1388 PRINTS Disease resistance protein signature 384 398 - -
Gso9g1333 1388 PRINTS Disease resistance protein signature 696 712 - -
Gso9g1333 1388 Pfam TIR domain 12 178 IPR000157 GO:0007165
Gso9g1333 1388 SUPERFAMILY "Winged helix" DNA-binding domain 419 527 IPR036390 -
Gso9g1333 1388 Gene3D - 5 183 IPR035897 -
Gso9g1333 1388 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 915 - -
Gso9g1333 1388 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 154 IPR035897 -
Gso9g1333 1388 Pfam zinc-binding in reverse transcriptase 1061 1128 IPR026960 -
Gso9g1333 1388 Gene3D - 349 433 IPR042197 -
Gso9g1333 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 443 IPR027417 -
Gso9g1333 1388 Gene3D Ribonuclease Inhibitor 715 917 IPR032675 -
Gso9g1333 1388 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gso9g1333 1388 SUPERFAMILY L domain-like 549 894 - -
Gso9g1333 1388 SMART till_3 11 151 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1333 Gso-Chr9 37071605 37076846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1333 7 778 WRKY Transcription Factor Family AT4G12020 29.937 4.93e-80 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1333 - - gmx:100792603 2668.65