Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1306 ATGATAGGAAGGATGGGTGATGAACCTCGTGCTGGTTCTTTCTGGACGGAGGAAATTAATGAGGCGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCAACTTCCCTTATTTGGTTTCTCGAATCCATCGGTAGAGATACGAGCACCAAGATAGCTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCACAAGACGAAAAAGAAGCGAATTGAGTGTGATGAGAGGCTTCATTCGCTGTTTGGGAGGAAGACCATTAGCCGGTTGAAAATCAATGACCTGCTAGAGTCACACTTTAAGGAGAACTGTGAGGAGTCCTCTGATGGCGTTTTCTTTGACTCAGAAGATGATGAGAATGCCTTGACAGCTTGTGAAACCCCGAGAACAGCACCTTCCGAGAGGAAGAGCCAACCAAAGAAACCAGTTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATATGAAGAGGAGTCTAGTTATGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTTGTTGGAAGCTTCATAAGAATCAGATGTGACCCTAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTACGAAGAAGAGTTCTGAAGTAAATGGGGAAATTCACCTTCAAGTTTCTGGTTTCATTAAAGATATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGAGGAGGAGTGTGAGAATTTGCACCAAAGAGTAAAAGATGGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGATTAAGCATTGGCTTGCAAGAGAATTTATTCTGCTACAAAATCTTATTGATCGAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGATGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGATGAGCAGGAACGGTTATTACGTGAATTTCCTCAAGTTATTGCAGATGAGCAAGAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACATATACAAAATCATCTTCAGTGACCGAGGTCCCAAATGAAGTTGCAAATTCAAAATTGGATATTGCTGATCTTGTAAAACAACAAAGCAATTCACCAAAGTCAATTCCCATTCTCCACAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCATAGAGCACCAGTCCCATGGCTTATCTGTCCAACTGCCACCAGAGCAACATACAGTCTTTGCATATAAGAATGACATGTCTAAGCCCGGTGATTCACAAGCACTTCCCGACAAGCAGATGTGGTCGCCTCAGATTCAGGTTATAAGGCTAAGCAATGGCTTATCAGTCCGACAGCCGCCAGAGCAACAAACAGACATTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGAACATCTAAGCCAGCCGAATCACAGGAAGAAAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCAGCTCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCTAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGCTATAAGGCTAAGTGATGGTTTACCTGTCCAACAGTCACCAGAGCAACAAACAGATTTTGCATATAAGAATGGACCATCTAAGCCAGCCAAATCACAGGAAGAGAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCATATCAGCTTGAGTTTATAGAGCTAAGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGACATGTCTAAGCCATCCGAATTGCATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATGCTGCAATCGCAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCCGCCAGAGCAACAAATAAGTTTTGCATATAATAATGGCACGTCTAAGCCAGCTGAATCGCATGAAGCGAAAATCTCTCAAGCACTGCCCAACAAACAAATACAGTCATCTCAGATTCAAGTTATAGAGCTAAGTGATGATGATGAAGATGAAGAAAATAAAAAACAAAGTACTACAAAACTGGTTCCTGCTGTGCAGTTGGATACCTTGATGTGGCATTACAGAGATCCAACGGGAAATGTACAAGGACCATTTTCCTTGATTTCTCTAAAACGTTGGAGTGATGCTGGCTACTTTCCTCGAGGTTTCAAGGTCTGGCAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCACAATTTGCCCAATTTTTCCCCTTTTAA 2679 0.4207 MIGRMGDEPRAGSFWTEEINEAVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTKIAQSEVANIVMEYVKQHNLFHKTKKKRIECDERLHSLFGRKTISRLKINDLLESHFKENCEESSDGVFFDSEDDENALTACETPRTAPSERKSQPKKPVFEKPRSCFAAIVPANIKLVYMKRSLVMDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGTKKSSEVNGEIHLQVSGFIKDIRIQMLSDDNFSEEECENLHQRVKDGLVKRPMIVDMEQTARVLHEDMIKHWLAREFILLQNLIDRANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQESESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNEVANSKLDIADLVKQQSNSPKSIPILHRAPEVPLLDMTNNSTMLNCISRDTIEHQSHGLSVQLPPEQHTVFAYKNDMSKPGDSQALPDKQMWSPQIQVIRLSNGLSVRQPPEQQTDIAYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGTSKPAESQEEKISQALPNKQIRPAQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPANSHEAKISQALPDKQMWSSQIRAIRLSDGLPVQQSPEQQTDFAYKNGPSKPAKSQEEKISQALPNKQIRPYQLEFIELSDDLSVQQPPEQQTNFTYKNDMSKPSELHEVKISQALPNKQMLQSQLDVIELSDGLPVQQPPEQQISFAYNNGTSKPAESHEAKISQALPNKQIQSSQIQVIELSDDDEDEENKKQSTTKLVPAVQLDTLMWHYRDPTGNVQGPFSLISLKRWSDAGYFPRGFKVWQSGNRQDEDVLLVNILAQFAQFFPF* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1306 892 Gene3D - 173 294 IPR036128 GO:0003677
Gso9g1306 892 ProSiteProfiles GYF domain profile. 830 884 IPR003169 GO:0005515
Gso9g1306 892 MobiDBLite consensus disorder prediction 513 533 - -
Gso9g1306 892 ProSiteProfiles SWIB/MDM2 domain profile. 37 120 IPR003121 -
Gso9g1306 892 Pfam Plus-3 domain 176 272 IPR004343 GO:0003677
Gso9g1306 892 Gene3D - 831 891 IPR035445 -
Gso9g1306 892 SUPERFAMILY SWIB/MDM2 domain 33 122 IPR036885 -
Gso9g1306 892 SUPERFAMILY Plus3-like 172 294 IPR036128 GO:0003677
Gso9g1306 892 MobiDBLite consensus disorder prediction 561 585 - -
Gso9g1306 892 SMART rtf1 171 274 IPR004343 GO:0003677
Gso9g1306 892 MobiDBLite consensus disorder prediction 654 668 - -
Gso9g1306 892 CDD SWIB-MDM2_like 61 118 - -
Gso9g1306 892 MobiDBLite consensus disorder prediction 612 637 - -
Gso9g1306 892 Pfam GYF domain 833 871 IPR003169 GO:0005515
Gso9g1306 892 ProSiteProfiles Plus3 domain profile. 171 297 IPR004343 GO:0003677
Gso9g1306 892 PANTHER OS01G0884500 PROTEIN 7 613 - -
Gso9g1306 892 PANTHER OS01G0884500 PROTEIN 623 886 - -
Gso9g1306 892 Gene3D SWIB/MDM2 domain 30 128 IPR036885 -
Gso9g1306 892 MobiDBLite consensus disorder prediction 612 627 - -
Gso9g1306 892 MobiDBLite consensus disorder prediction 654 682 - -
Gso9g1306 892 PANTHER OS01G0884500 PROTEIN 7 613 IPR045894 -
Gso9g1306 892 PANTHER OS01G0884500 PROTEIN 623 886 IPR045894 -
Gso9g1306 892 SMART gyf_5 831 886 IPR003169 GO:0005515
Gso9g1306 892 Pfam SWIB/MDM2 domain 61 118 IPR003121 -
Gso9g1306 892 SUPERFAMILY GYF domain 823 885 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1306 Gso-Chr9 36671385 36680431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1306 794 858 C2H2 Transcription Factor Family AT1G36950 40.299 5.11e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso9g1306 Plus-3 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1306 - - gmx:100779294 1764.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1672 16 37350637 37361528 Gso9g1306 9 36671385 36680431 GST