Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1303 ATGATGACACCAACCGGCGGCGAAGGAGCTGAGAAGATGGATGCAGAAGATGGTGTAAACTGCAGTGATTATGAGCATGACATAGAAAATGAAGAAAGTGGAGGGTACTGGTCAGGGATATATGACAGAAACATGGCTCATACAATGCCACTTCTTATGAAGAGGGCTAACACCACCTCCCAGATTGCTATTGTTGGTGCCAACCCCTGCCCTATTGAAAGCCTTGACTATGAGATTTTTGACAATGAAATATTGAAGAATGACTGGAGATCCAAGAAGAAGGTTCAGATAATCCATTATGTGATGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGTACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTTCTTATGACCACCGGTCTCATGTCTAAACACAGATATCTTGATGCTTTTTTAGCATATGCCGGTGCGAATATGTGTTTAGCAGCTGCTGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCAAAATATCTTGGCTCCAAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTAGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGGCCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGTCAGGGTGGATCTCACAAGTATCACTTGACTTGCACTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGTGTTGCTGCCGCCTTTCGTGCACCAGTAGGTGGTGTCCTTTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTTTGGAGGACTTTTTTCACAACAGCAGTGGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGGAAATGTGGGCTATTTGGGGAAGGTGGTCTGATAATGTATGACGTTAGTTCAGCCAATATAACATATAGTGCTAGTGGGATATTTGCAGTGCTACTTTTGGGAGCCATTGCTGGAATTCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGGACATATAGCATCATCAATGGAAAAGGTGCATTTTCCAAAATCTCTCTTGTTGTCACAATTGCTCTTTTGACATCATGTTGTTATTATTTCTTGCCATGGATTGCAAAGTGCATTCGCTGTCCTTCTAATTCAACAGTGATTTGTCCCTCTGTTGATGAGTCTGGAGACTACAAAAGCTTTCAATGCCCACCAGGCTACTACAATGATCTTGCTTCCCTGTTTCTAAACACCAATGATGATGCTATTCGCAATCTATTTAGCCCCAGGATAATCAAAGAGTTTCATATTACCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGCATTGCTATTCCATCCGGGCTCTTCATTCCTGTCATACTTGCTGGTGCTGCCTATGGCCGTCTCTTCGGCCGGCTCTTCGAAACGATTACCGAACTCGACAGAGGACTCTTTGCCTTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTGTCTCTTTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTAGTCTTATTGGTCTCAAAATCCGTGGCTGACAGCTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAATTTAGTAACACGCGATGTTGTTTCCGGTCCATTGATAACGTTTTCTGGCATCGAAAAGGTTGCAAATATATTGCAAGCTTTGAATACTACTGGACATAATGGGTTTCCTGTCATTGATGAACCACCTTTCTCAGATTCACCAGAGTTATGTGGACTTGTACTGAGGTCTCATTTACTAGTGTTACTGAAGGAGAAGATTTTTTCAAGGGATAGGGGTTTTGCAAATCAAAGGATCTTCCAAAGAATTTCTACTTTGGATTTTGGAAAGGCGGGATCAGGAAAGGGGATCAAACTAGAGGATCTTGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCTCCTTACACTGTGGTTGAGACAATGTCACTAGCCAAAGCTGCTATTCTTTTCCGACAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTCACCCTGATATCATGCCTCACAAATGGAAATGA 2370 0.4291 MMTPTGGEGAEKMDAEDGVNCSDYEHDIENEESGGYWSGIYDRNMAHTMPLLMKRANTTSQIAIVGANPCPIESLDYEIFDNEILKNDWRSKKKVQIIHYVMLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTGLMSKHRYLDAFLAYAGANMCLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAQNILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSHKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRVAIQFCATGKCGLFGEGGLIMYDVSSANITYSASGIFAVLLLGAIAGILGSIYNYLVDKVVRTYSIINGKGAFSKISLVVTIALLTSCCYYFLPWIAKCIRCPSNSTVICPSVDESGDYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPRIIKEFHITSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGAAYGRLFGRLFETITELDRGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKSVADSFNKGVYDQILKIKGLPYLEAHAEPYMRNLVTRDVVSGPLITFSGIEKVANILQALNTTGHNGFPVIDEPPFSDSPELCGLVLRSHLLVLLKEKIFSRDRGFANQRIFQRISTLDFGKAGSGKGIKLEDLDIQEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLHPDIMPHKWK* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1303 789 SMART cbs_1 725 776 IPR000644 -
Gso9g1303 789 SMART cbs_1 614 667 IPR000644 -
Gso9g1303 789 Gene3D Clc chloride channel 95 594 - -
Gso9g1303 789 Gene3D - 595 777 IPR046342 -
Gso9g1303 789 PRINTS Chloride channel signature 173 190 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 204 223 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 268 287 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 493 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 525 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 543 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 PRINTS Chloride channel signature 581 595 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 SUPERFAMILY Clc chloride channel 85 597 IPR014743 -
Gso9g1303 789 SUPERFAMILY CBS-domain pair 598 772 IPR046342 -
Gso9g1303 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 608 774 - -
Gso9g1303 789 Pfam Voltage gated chloride channel 161 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso9g1303 789 ProSiteProfiles CBS domain profile. 721 783 IPR000644 -
Gso9g1303 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 26 787 - -
Gso9g1303 789 Pfam CBS domain 725 771 IPR000644 -
Gso9g1303 789 PRINTS Plant CLC chloride channel signature 78 86 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso9g1303 789 PRINTS Plant CLC chloride channel signature 289 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso9g1303 789 PRINTS Plant CLC chloride channel signature 303 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso9g1303 789 PRINTS Plant CLC chloride channel signature 321 328 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso9g1303 789 PRINTS Plant CLC chloride channel signature 445 461 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso9g1303 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1303 Gso-Chr9 36619623 36629659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1303 25 787 Ion Channels AT5G49890 70.763 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1303 K05016 - gmx:100777170 1483.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1670 16 37317017 37329039 Gso9g1303 9 36619623 36629659 GST