Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1285 ATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCAGCACTGAACTTGTTCAACAATACTCTTCGCCGTTTCTCTTCCGAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGCATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTCGTCCGAGCTGCTGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCGGCATACTGTTTAATCCAACTGCCCTCGGGTGTTAAAAAGTTGATTGATTCTCGATGTAGGGCCACTGTTGGTGTTGTATCTAATCCAAGCCATGGGGATCGCAAACTTAGGAAGGCCGGACACAGCCGATGGCTTGGTCGAAGACCAGTTGTCCGAGGAGTGGCAATGAATCCAGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTGGTGGACGATTTGGGCGAGGATCTCTCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTACAAGACTGGACCCCTGAAGCGCAAAAGGTAG 588 0.4966 MAVSLWRSRTASSALNLFNNTLRRFSSEATNSSPHSTRESMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGRFGRGSLTPWGKPTKSGYKTGPLKRKR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1285 195 Gene3D Ribosomal protein L2, domain 3 121 195 IPR014726 -
Gso9g1285 195 MobiDBLite consensus disorder prediction 149 195 - -
Gso9g1285 195 SUPERFAMILY Translation proteins SH3-like domain 50 184 IPR008991 -
Gso9g1285 195 PANTHER RIBOSOMAL PROTEIN L2 42 195 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gso9g1285 195 Gene3D - 44 120 IPR014722 -
Gso9g1285 195 SMART Ribosomal_L2_C_2 48 181 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gso9g1285 195 ProSitePatterns Ribosomal protein L2 signature. 143 154 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gso9g1285 195 Pfam Ribosomal Proteins L2, C-terminal domain 50 179 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gso9g1285 195 TIGRFAM rplB_bact: ribosomal protein uL2 44 193 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Gso9g1285 195 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 42 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1285 Gso-Chr9 36423508 36428748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1285 47 160 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 2.50e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1285 - - gmx:100527286 377.867