Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1247 ATGGTAGAGCTCCCAAAAAGTAACACAATCATGCCTTCCAGTAAGACTCTCCTCCTCATAACTAATCTCACCCTTCTCAGTTTTGCAACAACTGAGGCACAAAACGACCCTTTCTATCTATACAAAGATTGTTCCAGCGACAAAACCAGCCCCAACACCTCCTTCCAATTTAACCTCAAGAACCTCCTTTCTTCCCTATCATCCAACGCCACCGGCAACACCCCATTTTACAACGCCACAATCAATGGCGAAAACCCCTCTGACTCTATCTATGGACTTTTCATGTGTAGGGCTGACGTGTCCTCTCACCTCTGCCAACTATGCGTCCGGAATGCAACCCAACAACTATCATCAGAATGCTCCTTATCCAAACAAGCAGTCATATGGTACGAGGAGTGCATGGTTTGGTATTCCACGTCTTTTATTTTCTCCAGTGTGGCCACAACACCTAGTAATCCCATGAAGAACAGTGGTAATGTCTCAAACCCAGAAAGCTTCATGCGTTTAGTGTTTTTGACATTAAACCAAACTGCAGATGAAGCATCATCCCAATCAAGTATTGGTAACAATAAGTTCGCAACAAAGGAAGCAAAAAACGTGTTAGGAATATCTCAGACTCAAACCCTTTATTGTTTAGCTCAGTGCACACCGAATCTTTCACCACATGATTGTAGAACATGTCTTGATGATGCGATAAGGCAAATTCAAGGGTGTTGTGAAGGAAGGATAGGAGGGAGAGTTCTGTTTCCTAGCTGCAATGTTAGGTATGAAATGTACCCTTTCTACAATGTTCCTTCAGCAACTCCTATACCAAAGCTTATTCCTCAAACAAAAACTTCCCATGCGGATTCAAATTTATCAGAATTTCCTATTTATCTTTCTCATAATTGCACAAACAAAACCTTCAATGCCAACAACAGTGCTTTCCAAACACACCTCACCAAACTCTTATTTAACCTAGCTTCTAATGCCACAACCGGGAATAAGTTTTATAAGGCTGATGTGGCTAACACAGTGTTTGGTCTCTTCTTGTGCCGAGACCAAGAGGATCTTCCTTCAGGGCTTTGTGGTGAGTGTGTCAAAAACGCAACGCATGAAATATCATCAAAGTGTGACTCGTTCCATGAGGCTATAATTTGGTACAGCCAGTGCATGCTTCGCTATTCCTATAGAAATTTTTTCAATGAAGTGGAAACAGGTCCTGTGTTTTCTGAGTTAAACACCACCAACAAGGATGATGAACAAAATTTCTTTACGATGAAGTTAGCGAAGACGTTAGATCAAGCGGCGATCCAGGCAGGGGACAGTGATGAGAAATACGGAAAAAGGACGACAAAATTGAATGATTTGCAAACCCTTTATGCTCTTGCTCAGTGCACACAAGATTTGTCTATTGAAGATTGCAAGGGTTGTCTGGGAATTGTGCTTGGAACATCAATTCCATGGTCTCGTTTGGGAAGTATAGGGGGAAGAGTTTTGTATCCTAGCTGCAATATCAGGTTTGAATTGTTCCAATTCTACAAAGACAATGACAAATCTGGGACGCCATCATCACCAGAAAGAAGAAAAGGCAAGTCGCGAATAATTATCTTGATTGTTGTGTTGGCAAGTATTTCTGTGACGTTATTCTTTGCAGCTTACTATTTTCTACATAAAAAAGCAAGAAAGAGGCGTGCAGCTATTCTCGAAGATAATTTTGGTCGTGGAATTGCTACTTTAGAGTCGTTGCAATTTGATTTGGCTACCATTATAGCAGCAACTAATAAATTCTCAGACCAGAATAAAATAGGCAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTCTTGATGGTTCACAAATAGCCGTAAAGAGATTATCAAAAAGTTCAAAGCAAGGATCAAATGAGTTCAAGAATGAAGTTTTATTAATAGCCAAACTTCAACACCGAAATCTAGTGACTCTAATTGGTTTTTGCTTTGAGGAAGAAGAAAAAATACTTATTTATGAATATGTGCCAAACAAGAGCCTTGATTACTTTCTATTTGATTCTCAACCGCAAAAGTTAAGCTGGTCTGAACGCTATAATATTATAGGAGGAATTGCTCAAGGAATTCTTTATTTACATGAACATTCTCGACTAAAAGTTATACATCGTGATCTCAAACCCAGTAATGTTCTATTAGATGAATGTATGATTCCAAAAATTTCAGATTTTGGTCTCGCCAGAATTGTTGAAATAAATCAAGACAAAGGAAATACAAGTGTAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTCGGACAATTTTCTGAGAAGTCAGATGTTTTCAGTTTTGGTGTCATGGTTTTAGAGATTATAAGTGGAAAAAAGAATTTCAGTTCTTATGAATCACACCGTATTACTAATGGCCTCTTAAGCTATGTTTGGAAACAATGGAGTGATCACACACCTTTGAACACATTGGACCCAGATATTACTGAAAATTATTCTGAAATTGAGGTCATCAAGTGCATTCAGATTGGTTTATTATGTGTTCAACAAGACCCTGATGCTAGACCTACAATGGTGACAGTTGCTTCATATCTGACTAGTCACCCTATTGAATTGCCAACACCACAAGAGCCTGCATTTTTCTTGCATGGTAGAATGCATGAAAATCCAGTTGCGAATGAATCAAGTTCCAATCAATCAATCAACACTTCTACACCATTCTCGAACAATCAAATGTCTATAAGCCAATTTCTTCCTCGATTTCTTAACATTCGTAGGGAAAAAAGATTCTTTGCATGTGTCTTGACTAAAGGAGTTACAGCTGATGTTATATCCAGATGGATAGTTCAGACTTTTTAA 2847 0.3867 MVELPKSNTIMPSSKTLLLITNLTLLSFATTEAQNDPFYLYKDCSSDKTSPNTSFQFNLKNLLSSLSSNATGNTPFYNATINGENPSDSIYGLFMCRADVSSHLCQLCVRNATQQLSSECSLSKQAVIWYEECMVWYSTSFIFSSVATTPSNPMKNSGNVSNPESFMRLVFLTLNQTADEASSQSSIGNNKFATKEAKNVLGISQTQTLYCLAQCTPNLSPHDCRTCLDDAIRQIQGCCEGRIGGRVLFPSCNVRYEMYPFYNVPSATPIPKLIPQTKTSHADSNLSEFPIYLSHNCTNKTFNANNSAFQTHLTKLLFNLASNATTGNKFYKADVANTVFGLFLCRDQEDLPSGLCGECVKNATHEISSKCDSFHEAIIWYSQCMLRYSYRNFFNEVETGPVFSELNTTNKDDEQNFFTMKLAKTLDQAAIQAGDSDEKYGKRTTKLNDLQTLYALAQCTQDLSIEDCKGCLGIVLGTSIPWSRLGSIGGRVLYPSCNIRFELFQFYKDNDKSGTPSSPERRKGKSRIIILIVVLASISVTLFFAAYYFLHKKARKRRAAILEDNFGRGIATLESLQFDLATIIAATNKFSDQNKIGKGGFGEVYKGILLDGSQIAVKRLSKSSKQGSNEFKNEVLLIAKLQHRNLVTLIGFCFEEEEKILIYEYVPNKSLDYFLFDSQPQKLSWSERYNIIGGIAQGILYLHEHSRLKVIHRDLKPSNVLLDECMIPKISDFGLARIVEINQDKGNTSVIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMVLEIISGKKNFSSYESHRITNGLLSYVWKQWSDHTPLNTLDPDITENYSEIEVIKCIQIGLLCVQQDPDARPTMVTVASYLTSHPIELPTPQEPAFFLHGRMHENPVANESSSNQSINTSTPFSNNQMSISQFLPRFLNIRREKRFFACVLTKGVTADVISRWIVQTF* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1247 948 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 26 270 - -
Gso9g1247 948 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 290 512 - -
Gso9g1247 948 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 519 907 - -
Gso9g1247 948 CDD STKc_IRAK 596 862 - -
Gso9g1247 948 ProSiteProfiles Gnk2-homologous domain profile. 399 506 IPR002902 -
Gso9g1247 948 ProSiteProfiles Protein kinase domain profile. 590 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1247 948 ProSiteProfiles Gnk2-homologous domain profile. 291 393 IPR002902 -
Gso9g1247 948 ProSitePatterns Protein kinases ATP-binding region signature. 596 618 IPR017441 GO:0005524
Gso9g1247 948 ProSiteProfiles Gnk2-homologous domain profile. 148 261 IPR002902 -
Gso9g1247 948 Gene3D - 401 506 IPR038408 -
Gso9g1247 948 Gene3D - 149 261 IPR038408 -
Gso9g1247 948 Gene3D - 36 141 IPR038408 -
Gso9g1247 948 Gene3D - 290 393 IPR038408 -
Gso9g1247 948 Gene3D Phosphorylase Kinase; domain 1 553 665 - -
Gso9g1247 948 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 270 - -
Gso9g1247 948 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 519 907 - -
Gso9g1247 948 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 290 512 - -
Gso9g1247 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Gso9g1247 948 Gene3D Transferase(Phosphotransferase) domain 1 666 867 - -
Gso9g1247 948 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Gso9g1247 948 Pfam Salt stress response/antifungal 44 139 IPR002902 -
Gso9g1247 948 Pfam Salt stress response/antifungal 158 258 IPR002902 -
Gso9g1247 948 Pfam Salt stress response/antifungal 413 502 IPR002902 -
Gso9g1247 948 Pfam Salt stress response/antifungal 297 389 IPR002902 -
Gso9g1247 948 SMART serkin_6 590 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1247 948 SUPERFAMILY Protein kinase-like (PK-like) 576 902 IPR011009 -
Gso9g1247 948 Pfam Protein kinase domain 591 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1247 Gso-Chr9 35817391 35822139 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1247 290 916 Receptor kinase-like Gene Family AT4G05200 44.257 2.95e-177 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso9g1247 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1247 - - gmx:100807113 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1619 16 36859685 36879891 Gso9g1247 9 35817391 35822139 GST