Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1238 ATGAATCTGCTTCCTTCAGCCCCCATATCCAAAGTTGATGACAGTTTAGAGCATTCATTGAGTTTTGAGAGTACCATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCATCACCTGCAACACAAAATGTCCCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGCCAATGATTCCAACCAAAAATTCAGCACTAGTAGCATCAGCCAACCAACAAAGAAACTTTTCTATGGGGCAAATAAAAAGAATCATGACTACTCTAACGAACATAAGAAGAAGATGATTCATAAGGAGATTGAGAGGCAAAGGAGACAAGAAATGGCTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAAACATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCAATCATTCCAATAATATGGAAAATAACCATGAGGGCTTGCATACATCTTGCAACTTCACTGTCCACGAGAAAAATGGTATTATGGGAATAGAAATCACCAGTGTCTTCAGAGAGGAAAAGCCTAAAATTTCAAAGTTACTACAGTTTTTGACTGAAGAAGGACTTGAAGTTGTTAGTTTCTTTTCAACAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTGTGAGGTGAACCATTCCAACAGTGTAGATCCATCTGAGCTGAGAAAGAAAGTTTCCAAAGCATTTTCAACCTTTAGATGCTCTGATTGA 822 0.4002 MNLLPSAPISKVDDSLEHSLSFESTMFPLQRGNELVIQFSNSPHHHLQHKMSQDLILDDYASLDANDSNQKFSTSSISQPTKKLFYGANKKNHDYSNEHKKKMIHKEIERQRRQEMATFYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQKHIKELGAKRDELKKLSNHSNNMENNHEGLHTSCNFTVHEKNGIMGIEITSVFREEKPKISKLLQFLTEEGLEVVSFFSTEVNGRLLHSVQCEVNHSNSVDPSELRKKVSKAFSTFRCSD* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1238 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 171 IPR036638 GO:0046983
Gso9g1238 273 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 26 271 IPR015660 GO:0003700|GO:0006357
Gso9g1238 273 Gene3D - 91 187 IPR036638 GO:0046983
Gso9g1238 273 CDD bHLH_AtORG2_like 101 177 - -
Gso9g1238 273 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 271 - -
Gso9g1238 273 SMART finulus 106 158 IPR011598 GO:0046983
Gso9g1238 273 Coils Coil 149 179 - -
Gso9g1238 273 Pfam Helix-loop-helix DNA-binding domain 101 153 IPR011598 GO:0046983
Gso9g1238 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1238 Gso-Chr9 35531021 35533003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1238 97 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.143 4.05e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g1238 HLH 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1238 - - gmx:100796473 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1613 16 36772365 36774137 Gso9g1238 9 35531021 35533003 GST
Gso9g1238 9 35531021 35533003 Gso20g1224 20 42216477 42217826 PCT
Gso9g1238 9 35531021 35533003 Gso10g2154 10 48587124 48590752 PCT
Gso20g1224 20 42216477 42217826 Gso9g1238 9 35531021 35533003 PCT
Gso10g2154 10 48587124 48590752 Gso9g1238 9 35531021 35533003 PCT