Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1237 ATGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA 633 0.4044 MKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1237 210 CDD bHLH_AtORG2_like 26 102 - -
Gso9g1237 210 Gene3D - 18 105 IPR036638 GO:0046983
Gso9g1237 210 SMART finulus 31 83 IPR011598 GO:0046983
Gso9g1237 210 PANTHER TRANSCRIPTION FACTOR 6 202 - -
Gso9g1237 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 77 IPR011598 GO:0046983
Gso9g1237 210 Pfam Helix-loop-helix DNA-binding domain 27 78 IPR011598 GO:0046983
Gso9g1237 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 202 IPR015660 GO:0003700|GO:0006357
Gso9g1237 210 Coils Coil 67 94 - -
Gso9g1237 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 93 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1237 Gso-Chr9 35501081 35502787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1237 30 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.909 1.61e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g1237 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1237 - - gmx:100795953 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1612 16 36749402 36757479 Gso9g1237 9 35501081 35502787 GST
Gso9g1237 9 35501081 35502787 Gso20g1225 20 42231718 42233390 PCT
Gso9g1237 9 35501081 35502787 Gso10g2153 10 48570714 48572233 PCT
Gso20g1225 20 42231718 42233390 Gso9g1237 9 35501081 35502787 PCT
Gso10g2153 10 48570714 48572233 Gso9g1237 9 35501081 35502787 PCT