Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1236 ATGAACTTGAAACAATACTGTTGTTTCCTCAAAGATGAAGGTCTAAACAAAATACAGGTTTCCAACAAGAAGAACAGTAGGGACTATCCATGGGAAATGTACACTTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAAGCGTTCAGATTGCAGTGAAGCGATTGAAGACAATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTGTTAGGAAGAGTGAGGCACCAGAATTTGTTGGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAACCATAGCTTGTTAACTCATTTGCATGGTCCACTTGCTAAGGAATGTCAGCTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTAGCGTATCTGCACCATGAATCAACTCCTCACATCATACACAGAGATATAAAGGCAAGCAATGTTCTTCTAGACCCTGAATTCCAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCGGATGGTGTGACCCATCTTACCACAAAAGTTAAGGGCACCCTAGGATATTTGGCACCAGAATACGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGCTTTGGAATTTTACTTTTGGAGATTATTAGTGCCAAGAAACCAATTGAGAAATTCCCAGGAGGAGTGAAAAGGGACATTGTTCAATGGGTCACTCCATATGTCAACAAAGGTCTCTTCAACAACATTGCGGATCCAAAGTTGAAGGGGAAATTTGATTTGGAGCAATTGAAAAATGTTACCACCATAGCTCTTAGATGCACCGATAGTAGTGCGGATAAGAGGCCTAGCATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGGGAGCACTTGGGGAGAAGAGAATATTCCAACTTTAAGTATCAAGAATGGAGACGAAGGAAATGACAAAGATGACAAATTAAAAAATAACTAG 1056 0.4148 MNLKQYCCFLKDEGLNKIQVSNKKNSRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTSKSVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHQNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWPRRMSIAIGAAEGLAYLHHESTPHIIHRDIKASNVLLDPEFQAKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWVTPYVNKGLFNNIADPKLKGKFDLEQLKNVTTIALRCTDSSADKRPSMKEVVDWLKNGVGSTWGEENIPTLSIKNGDEGNDKDDKLKNN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1236 351 Pfam Protein tyrosine and serine/threonine kinase 47 315 IPR001245 GO:0004672|GO:0006468
Gso9g1236 351 PANTHER - 4 344 - -
Gso9g1236 351 Gene3D Phosphorylase Kinase; domain 1 10 121 - -
Gso9g1236 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gso9g1236 351 PANTHER OS01G0750732 PROTEIN 4 344 - -
Gso9g1236 351 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Gso9g1236 351 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1236 351 Gene3D Transferase(Phosphotransferase) domain 1 122 324 - -
Gso9g1236 351 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g1236 351 CDD STKc_IRAK 52 319 - -
Gso9g1236 351 SUPERFAMILY Protein kinase-like (PK-like) 27 324 IPR011009 -
Gso9g1236 351 MobiDBLite consensus disorder prediction 332 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1236 Gso-Chr9 35469382 35471925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1236 35 318 Receptor kinase-like Gene Family AT4G02010 45.139 7.47e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso9g1236 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1236 - - gmx:100800710 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1611 16 36745044 36748319 Gso9g1236 9 35469382 35471925 GST
Gso9g1236 9 35469382 35471925 Gso20g1226 20 42249330 42251356 PCT
Gso9g1236 9 35469382 35471925 Gso10g2152 10 48560047 48562043 PCT
Gso20g1226 20 42249330 42251356 Gso9g1236 9 35469382 35471925 PCT
Gso10g2152 10 48560047 48562043 Gso9g1236 9 35469382 35471925 PCT