Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1218 ATGGACGTGGACGGTGGCAACAAGCGCGTGTACAACCGCCTTGGTGGGGACGCGAAGCACCAGAAAGTGTGCTACCACTGGCAAGCGGGGAAGTGCAACCGCTACCCGTGCCCCTTCCTGCACAGCGAATCGCCCGCGAATTCGCACCACGCCAATGGCACCTCCTCGAAGCGGACGTACGACAATTCGGGCTTCTCCGGCCCACGCCGCAGCCCCAATTTCAACAACACGTGGGGCCGCGGCGGGGGCCGCGGTGGTGGTGGTGGTGGTGGTGCCGGTAGAGGTGTGGTGGTGAAGGCCGAGAAAGTTTGTAATTATTGGATTCAGGGGAGTTGTAGTTATGGAGAGAGGTGCAAGTTCCTTCACTCCTGGAGTGTGGGGGATGGGTTTTCTTTGCTGACCCAGCTTGAAGGTCATCAGAAGGCTGTGAGTGCAATTGCCTTTCCCTCTGGTTCTGATAAGCTGTATACTGGAAGCACTGATGAGACTGCAAGGATTTGGGACTGCCAATCTGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACACAAAATTTATCGGAGCTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGACGGATCTATATTGGCATGGAAGTTTAATGTAGCTACCAACTGCTTTGAGCCGGCTGCATCACTTAAAGGTCATTCTCGGGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGTTCAATGGACAATACAATAAAAGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTACTGAAAGCGGAAACTTGGAAGTGACATATTCTCACAATGAAGAAAATGGTATACTTACCCTATGTGGGATGCATGATTCACAAGGCAAACCCATTTTGCTCTGCGCTTGCAATGATAATACTGTACACCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTAACAAAACAAGAGGTACGAGCAATTCAGATAGGGCCTAACGGCATATTCTTCACGGGTGACGGTACGGGTGAAGTAAGAGTGTGGAATTGGATAGCGGAGGCAACTACTACCACCCAATAA 1281 0.484 MDVDGGNKRVYNRLGGDAKHQKVCYHWQAGKCNRYPCPFLHSESPANSHHANGTSSKRTYDNSGFSGPRRSPNFNNTWGRGGGRGGGGGGGAGRGVVVKAEKVCNYWIQGSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIKVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYSHNEENGILTLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKQEVRAIQIGPNGIFFTGDGTGEVRVWNWIAEATTTTQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1218 426 MobiDBLite consensus disorder prediction 46 78 - -
Gso9g1218 426 Gene3D - 111 213 IPR015943 GO:0005515
Gso9g1218 426 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Gso9g1218 426 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 424 - -
Gso9g1218 426 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Gso9g1218 426 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Gso9g1218 426 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Gso9g1218 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 298 IPR001680 GO:0005515
Gso9g1218 426 SMART c3hfinal6 100 124 IPR000571 GO:0046872
Gso9g1218 426 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Gso9g1218 426 PANTHER - 1 424 IPR044715 -
Gso9g1218 426 Gene3D - 6 58 - -
Gso9g1218 426 Gene3D - 214 426 IPR015943 GO:0005515
Gso9g1218 426 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 292 - -
Gso9g1218 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Gso9g1218 426 Pfam WD domain, G-beta repeat 255 289 IPR001680 GO:0005515
Gso9g1218 426 Pfam WD domain, G-beta repeat 132 168 IPR001680 GO:0005515
Gso9g1218 426 Pfam WD domain, G-beta repeat 294 328 IPR001680 GO:0005515
Gso9g1218 426 Pfam Zinc finger domain 104 122 - -
Gso9g1218 426 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Gso9g1218 426 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 168 - -
Gso9g1218 426 SUPERFAMILY WD40 repeat-like 117 417 IPR036322 GO:0005515
Gso9g1218 426 ProSiteProfiles Zinc finger C3H1-type profile. 99 125 IPR000571 GO:0046872
Gso9g1218 426 SMART WD40_4 379 416 IPR001680 GO:0005515
Gso9g1218 426 SMART WD40_4 208 245 IPR001680 GO:0005515
Gso9g1218 426 SMART WD40_4 252 289 IPR001680 GO:0005515
Gso9g1218 426 SMART WD40_4 292 329 IPR001680 GO:0005515
Gso9g1218 426 SMART WD40_4 333 376 IPR001680 GO:0005515
Gso9g1218 426 SMART WD40_4 129 168 IPR001680 GO:0005515
Gso9g1218 426 SUPERFAMILY CCCH zinc finger 100 123 IPR036855 GO:0046872
Gso9g1218 426 MobiDBLite consensus disorder prediction 46 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1218 Gso-Chr9 35117285 35123838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1218 231 416 Miscellaneous Gene Families AT5G08390 26.020 6.83e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso9g1218 WD40 8.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1218 - - gmx:100792089 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1218 9 35117285 35123838 Gso9g1218 9 35117285 35123838 ECH