Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1215 ATGGCCTCTGCAACAACAACAACACTCTCTCACCATCATCACCTTCCTCTCCTCCTTCATTCTCCTCTTTCCATCAAATTTACCAAACCGCCCCTCTCTCTTTCCCTCTCGCGACGCCCCCTTCTAACGAACCCTCTCCACGCGCGCTTCCTCCTCCCTCCGCCACGCGCCTACGCCGCCGCGCCCGCGTCCGACCCGAATTTCGCCGACCCCGATCCGAAACTCGCCGGGTCGGACCCGGAGAACGCGAGGCCACGGAATGTCATCACGTGGAGCCTCCTCTGCACGCTCCTCATGAAGCACAAGCTGCGCCTCGCCCTCGCGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCATCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGCACTAGACCTGAGCCGTTATGGAAGCTGCTTAGTAAAATTGGAGTTCTGTATGCCCTGGAGCCACTTTTGACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGCTAACATCTGATTTGGGTTCTCTTAAAAATATAGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGAGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTATCCCCACAACTGGCACCCATTCTGGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCTACTTTGCCGGTTTTTAAAGCACATGGGATGGTCCAAGCATCTATATCTGATTGTGTAACAGAAACATTTTCTGCTATTCGAACAGTAAGATCATTTGGGGGTGAAAAGCGCCAGATGTTCACATTTGCTAACCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGAACTTTCAAATCTGTAAATGAGTCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTGTATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAGCTCTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGATTGGTTAACACTTTTGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTATCTGGAGCTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAGACAAAAAACACTGGATGATGAAAACTATAAATTGATCTTATCAAATATTTCTACTGAGAATAACCAAAAACATTATTTGCATTACATGTCAGCTCTCAAAACATCAAGCAATTTGTTTAGCTTAGCATGGTCTGGAGATATTTGTCTTGAAGATGTATATTTCTCCTATCCTTTAAGGCCAGATGTGGAAATCTTGCGTGGCTTAAATTTAAGACTAAAATTTGGAACTGTAACTGCACTGGTCGGTCCTAGTGGTGCAGGCAAAAGTACTGTAGTACAGCTATTATCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGATAAGAGTGAATGGGCTCGGGTTGTATCGATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTTTCTGTTGGGGAAAATATTGCATATGGGCTTCCTGATGAAGATGTTTCTAAAGAAGATGTGATTAAGGCAGCGAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAAAGACAGAGAATTGCTATTGCCCGGGCTCTCCTAAAGAATGCTCCTATCCTTATACTTGATGAGGCTACCAGTGCCCTTGATGCTGTCAGTGAGCGATTGGTCCAGGATGCTCTCAACCATCTGATGAAGGGAAGGACAACATTAGTAATAGCACATCGATTAAGCACAGTCCAAAATGCATATCAAATTGCACTCTGTTCTGAGGGGCGGATTGCAGAACTAGGCACCCATTTTGAGTTATTGGCTAAGAAAGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCATTTGAATAA 2133 0.4383 MASATTTTLSHHHHLPLLLHSPLSIKFTKPPLSLSLSRRPLLTNPLHARFLLPPPRAYAAAPASDPNFADPDPKLAGSDPENARPRNVITWSLLCTLLMKHKLRLALAVATLFACSTCTLSMPIFSGRFFEVLIGTRPEPLWKLLSKIGVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLGSLKNIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGMVQASISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGAQVDDALAYGLERELRQKTLDDENYKLILSNISTENNQKHYLHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKFGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1215 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 704 IPR003439 GO:0005524
Gso9g1215 710 Pfam ABC transporter 484 635 IPR003439 GO:0005524
Gso9g1215 710 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 389 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso9g1215 710 Gene3D - 459 708 IPR027417 -
Gso9g1215 710 ProSitePatterns ABC transporters family signature. 607 621 IPR017871 GO:0005524
Gso9g1215 710 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 53 708 IPR039421 -
Gso9g1215 710 SMART AAA_5 493 667 IPR003593 -
Gso9g1215 710 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 53 708 - -
Gso9g1215 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 705 IPR027417 -
Gso9g1215 710 Pfam ABC transporter transmembrane region 107 376 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso9g1215 710 CDD ABC_MTABC3_MDL1_MDL2 466 705 - -
Gso9g1215 710 CDD ABC_6TM_TAP_ABCB8_10_like 108 397 - -
Gso9g1215 710 SUPERFAMILY ABC transporter transmembrane region 94 402 IPR036640 GO:0005524|GO:0016021
Gso9g1215 710 Gene3D ABC transporter type 1, transmembrane domain 78 403 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1215 Gso-Chr9 34995701 35002888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1215 463 710 Calmodulin-binding Proteins AT2G36910 54.582 2.63e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1215 K05657 - gmx:100791034 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1215 9 34995701 35002888 Gso9g1215 9 34995701 35002888 ECH