Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1213 ATGTTTACCTTGAATCATTCTTCTGATTTGTACCATGTTTCCCCTGAGCTCTCATCTTCCTTGGACACATCCTCGCCGGCTTCGGAGGGCTCTCGTGGCGTGGCATTTTCCGACGAGGAGGTGCGGCTGGCGGTGAGGCACCCGAAGAAGCGGGCAGGTCGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGGGGGGTGAGGAGGAGGAACTCGGATAAGTGGGTGTGTGAGGTGAGGGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACTTTCCCCACGCCGGAGATGGCGGCTCGGGCGCACGACGTGGCGGCAATGGCCCTGAGGGGCCGGTATGCCTGTCTAAACTTTGCTGACTCGGCCTGGCGGTTACCTGTTCCCGCCACGGCCGAGGCAAAGGATATACAGAAGGCAGCAGCAGAAGCTGCCCAGGCTTTCAGACCAGATCAAACCTTAAAAAATGCTAATACAAGGCAGGAGTGTGTGGAGGCGGTGGCGGTGGCGGTGGCGGAGACAACAACGGCGACGGCACAAGGGGTGTTTTATATGGAGGAAGAAGAGCAGGTGTTGGATATGCCTGAGTTGCTTAGGAATATGGTGCTCATGTCCCCAACACATTGCTTAGGGTATGAGTATGAAGATGCTGACTTGGATGCCCAAGATGCTGAGGTGTCACTATGGAATTTCTCAATTTAA 705 0.5617 MFTLNHSSDLYHVSPELSSSLDTSSPASEGSRGVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSAWRLPVPATAEAKDIQKAAAEAAQAFRPDQTLKNANTRQECVEAVAVAVAETTTATAQGVFYMEEEEQVLDMPELLRNMVLMSPTHCLGYEYEDADLDAQDAEVSLWNFSI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1213 234 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gso9g1213 234 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gso9g1213 234 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gso9g1213 234 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gso9g1213 234 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 234 - -
Gso9g1213 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 234 IPR045277 GO:0003700
Gso9g1213 234 MobiDBLite consensus disorder prediction 15 34 - -
Gso9g1213 234 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gso9g1213 234 MobiDBLite consensus disorder prediction 15 31 - -
Gso9g1213 234 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gso9g1213 234 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gso9g1213 234 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1213 Gso-Chr9 34977416 34978612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1213 10 232 AP2-EREBP Transcription Factor Family AT5G51990 53.712 3.78e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso9g1213 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1213 - - gmx:547622 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1591 16 36511323 36512505 Gso9g1213 9 34977416 34978612 GST
Gso9g1213 9 34977416 34978612 Gso20g1241 20 42453922 42455192 PCT
Gso9g1213 9 34977416 34978612 Gso10g2136 10 48385695 48387103 PCT
Gso20g1241 20 42453922 42455192 Gso9g1213 9 34977416 34978612 PCT
Gso10g2136 10 48385695 48387103 Gso9g1213 9 34977416 34978612 PCT