Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1211 AATTTTGACTCGGTACATTTATTTCACAGGTTCTGCTTTATATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAGCACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCTACTATTGAAGGAGATTCTGATCTCGATACATCAATAGCCTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCAGACAGTACATGGTTATGCCCCAGATGTGTTGTTGATGAAGTTTCTAAAGGAACATCCAATTCAGTAGAGAGGACAACCGTGGAATGTAATGCAGATGATCATAATAGTAACAGTGAATGCCATGCTAAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGTTGTTGTTGTTTCAATGGTTAACCAAACAATATGGGTTCCAGCAACAAGTGAGAAAATCCTATTGCCTTTTGAAGTTGGTGGGTACCCAATGACTGAATCATGTATTTTAATGTCTGACACAAATGGTCAGCAAAGTGGGGAAGTGAAGACAGAGACAAATACGTTACGAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCAAACAACATATCCTGTAGCGTAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGTCCGTGGAGCAAGGGATGACCCAAGTGGCTTTGACGGAACCAAGTTATTCGACGAGTCCCTTACCAAAACTAGTCCATCCAAAATTGAATCCGAAATGGGTCTTCAACTTGGTTTGTCAGTGGGCTCTTTCTTATCTGTTGATGGTGCAGACAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTGTGCTTGAGTTCAGAAGAATGTTTTTTGAAAGGAGATGAAATTGAAGCAAATGCTTGTAAGGACAATGCCAAAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTATAGATAA 1140 0.3965 NFDSVHLFHRFCFICIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEEKNSTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDEVSKGTSNSVERTTVECNADDHNSNSECHAKDSFSGKVSVSVADTGETVVVVSMVNQTIWVPATSEKILLPFEVGGYPMTESCILMSDTNGQQSGEVKTETNTLRIMEEEELELSLSNNISCSVTSKSLVHNDLKKSVRGARDDPSGFDGTKLFDESLTKTSPSKIESEMGLQLGLSVGSFLSVDGADKNETKDQATDVLCLSSEECFLKGDEIEANACKDNAKVAGGKRKHADYR* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1211 379 SUPERFAMILY RING/U-box 9 36 - -
Gso9g1211 379 PANTHER RING FINGER PROTEIN 41, 151 61 339 - -
Gso9g1211 379 SMART PHD_3 89 141 IPR001965 -
Gso9g1211 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 71 IPR013083 -
Gso9g1211 379 ProSiteProfiles Zinc finger PHD-type profile. 23 143 IPR019787 -
Gso9g1211 379 SUPERFAMILY FYVE/PHD zinc finger 104 143 IPR011011 -
Gso9g1211 379 Pfam PHD-finger 104 141 IPR019787 -
Gso9g1211 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 141 IPR013083 -
Gso9g1211 379 PANTHER RING/U-BOX PROTEIN 61 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1211 Gso-Chr9 34921638 34927269 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso9g1211 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1211 - - gsj:114368396 771.926