Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1187 ATGGGCTTTCTCCGGCGACTCTTCGGCGGCAAGAAGCACCACAACAACCCCCCACCCTCCTCCTCCGACGCCTCCAAACCCAACAAAGACAACAAAAAAACATGGAGCTTCATCAAACACAGTACGAGGTACAAACCCAACACATTACCAACAACACTTAACAACAACAGCAACTTTGACTCTTCCACTTCCTCTGCTCCTTTCACTGAATCTTTGGACGCTAACAAGCATGCCATTGCTGTCGCCGCCGCCACCGCCGCGGTCGCTGAAGCTGCTCTCGCCGCCGCACATGCTGCGGCCGAGGTTGTCAGGCTGACCAGCGGCACCGGTGGCGTCTCCAGCCGGCCCGCCCCGGCGCCGCAGCCCCGACGCGTGGCGGAGGAAACCACCGCCGCCGCTGTAAAAATCCAGTCGGCTTTCAGAGGTTACTTGGCAAGGAGAGCATTGAGAGCACTTAAAGCACTGGTGAAGTTGCAAGCATTGGTGAGGGGTCACATTGTGAGAAAGCAAACTTCAGATATGCTAAGGCGCATGCAAACCTTGGTGAGACTGCAGTCTCGGGCACGTGCAACTCGAGGGAACTTGTCAGATAATATGCATTCTTTCAAGTCTCCACTTTCTCATTACCCTGTCCCTGAAGATTATAAGCACTCACTTCGTGCCTATAGTACAAAGTTTGATGGATCTATTCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACATAGACGTGGAGAAAGCCCGGTTTGGTTCCCATTGGTTAGATAGTTGGATGGAAGAAAATTCATGGAGACAAACTAGAGATGCTTCATTAAAAATTGGACGCCTTGATGATGAGAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAACTCACACCATAGTAGTGGCAGCTCATATCAGACATCATCACATCATTACTTGTATTCTGATTACAACAATGAGAATTTTGTGGCATATGAATCTCCATCAAAGGGTTCTTCCAAAGGTCTAAATCCAAGTCTCTCTTCTAGGGAGGTTCTTCCCTTTGGGTCTTTGACATTTCACAAAGGAAAAGAAGAAGTGGCGGCTTTGCCAAATGTTGAGGATAGTCCTCAAGCATTTTCTGCCTCCTCTAGGCTTGGAAGTGGTGGTGCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTTTCTTCAGTGGCTACCCGGGTCATCCCAATTACATGGCGAATACAGAGTCTTCTAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATGGAGTTTGAGAGATATGGTCATTCCACAAGAAGGTCTCTTCAGGGTCTTTGGGAAGCAGAGCCTAGTTCAGATAGGGATTCTGATTTTAGGAGCCAGGCCTATGCAACGACCACAAGCAGCAGTTTGAACAGAATTGGGAGTGCCAATTTAAGATGA 1449 0.4852 MGFLRRLFGGKKHHNNPPPSSSDASKPNKDNKKTWSFIKHSTRYKPNTLPTTLNNNSNFDSSTSSAPFTESLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGTGGVSSRPAPAPQPRRVAEETTAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTSDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSPLSHYPVPEDYKHSLRAYSTKFDGSILKRCSSNANFRDIDVEKARFGSHWLDSWMEENSWRQTRDASLKIGRLDDEKSDKILEVDTWKPHLNSHHSSGSSYQTSSHHYLYSDYNNENFVAYESPSKGSSKGLNPSLSSREVLPFGSLTFHKGKEEVAALPNVEDSPQAFSASSRLGSGGARRGPFTPTKSECAWSFFSGYPGHPNYMANTESSRAKVRSHSAPRQRMEFERYGHSTRRSLQGLWEAEPSSDRDSDFRSQAYATTTSSSLNRIGSANLR* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1187 482 Pfam Protein of unknown function (DUF4005) 374 459 IPR025064 -
Gso9g1187 482 Pfam IQ calmodulin-binding motif 130 150 IPR000048 GO:0005515
Gso9g1187 482 Pfam IQ calmodulin-binding motif 153 170 IPR000048 GO:0005515
Gso9g1187 482 Gene3D - 126 182 - -
Gso9g1187 482 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Gso9g1187 482 SMART iq_5 128 150 IPR000048 GO:0005515
Gso9g1187 482 SMART iq_5 151 172 IPR000048 GO:0005515
Gso9g1187 482 MobiDBLite consensus disorder prediction 1 65 - -
Gso9g1187 482 PANTHER IQ-DOMAIN 5-RELATED 1 480 - -
Gso9g1187 482 PANTHER CALMODULIN-BINDING PROTEIN 1 480 - -
Gso9g1187 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 174 IPR027417 -
Gso9g1187 482 MobiDBLite consensus disorder prediction 459 482 - -
Gso9g1187 482 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Gso9g1187 482 MobiDBLite consensus disorder prediction 436 482 - -
Gso9g1187 482 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1187 Gso-Chr9 34173855 34179437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1187 1 448 IQD Protein Family AT5G62070 45.455 2.28e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1187 - - gmx:100775743 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1577 16 36312382 36318141 Gso9g1187 9 34173855 34179437 GST
Gso9g1187 9 34173855 34179437 Gso20g1251 20 42568881 42573579 PCT
Gso9g1187 9 34173855 34179437 Gso10g2125 10 48265254 48270123 PCT
Gso20g1251 20 42568881 42573579 Gso9g1187 9 34173855 34179437 PCT
Gso10g2125 10 48265254 48270123 Gso9g1187 9 34173855 34179437 PCT