Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1185 ATGGCTAGTGTTTACACTGTAGATCCACATCTTTTTTCTTCACCCTTTGATATTTCAAAGCAAAATCCCTCTACCTTGAATTTAGCTGCTCAAAGGAGAATGGAAGGCCATAGCGAGATGGGTCAAATCGGAGAAAGTTTTGATACTAGTAATTTGCTGGGGAGGCTGAGGGACGATGAGTATGAAAGCCGGTCTGGAAGTGACAATTTTGATGGCGGATCTGGTGATGACCAGGATGCTGGGGATGATCAGCCACATAAAAAGAAGAAGAAATACCACAGACACACCCCTCAACAAATTCAGGAGCTTGAAGCGTTTTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACTGATCTTAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAACGACAAGCTCCGAGCTGAGAACAGTGTAATGAAGGATGCTTTGGCAAATCCGACATGTAACAACTGTGGTGGCCCAGCCATTCCTGGTCAAATTTCCTTGGAGGAGCACCAAACTAGAATGGAAAATGCTCGACTGAAGGATGAACTGAACCGAATATGTGCATTGGCAAACAAGTTCCTGGGCCGGCCACTCTCGCCACTGGCCAGTCCTATGGCTCTGCCACCCTCAAATTCTGGTCTAGAGCTTGCTATTGGAAGAAATGGAATTGGTGGTCCAAGCAATTTTGGCATGTCCTTGCCAATGGGATTTGATGTGGGAGATGGAGTTATGGGCTCCTCACCTGGGATGTCTAGTATGGGTGCTAGATCACCAATGGGAATGATGGGAAATGAAATCCAGCTTGAGAGATCTATGCTTTTAGACCTTGCATTAAATGCTATGAATGAATTAATTAAGATGGCTCAGCCAGATACCTCTCTTTGGATTAAGAGCTCTGATGGCAGGAATGAAGTACTCAACCATGATGAGTATGCAAGACTGTTTTCTCCTTATGTTGGATCAAAACCTGCTGGTTATGTGACTGAAGCTACAAGAGGGACCGGAGTAGTACCAGCCAGCAGTTTGGGCATTGTTGAAACATTGATGGATGTGGATCGATGGGCGGAGATGTTTTCATCTATGATTGCTAGTGCTGCCACTTTGGAAGTACTGTCTAGTGGCATGGGTGAAAGCAGAAGTGGAGCTTTGCAAGTGATGCTTGCTGAGGTTCAATTGCTTTCTCCACTAGTCCCTGCTCGTTCATTGAGTTTCCTCAGGTATAGCAAGCAGCACGGCGAAGGTGTATGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCGTAATGTTACCAATTCACATCCATTAATGAGCTGCAGGAGGCTTCCCTCTGGCTGTGTTATTCAGGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGAACATTCCCAATATGACGAGAGTGTTGTCCACCAACTTTATCGCCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCAGAGATGGATTGCCACCCTCTTAAGGCAGTGTGACTGCTTGGCAATCCTCATGTCTCAAATCCCATCTGAGGACCCCACAGTCATTAGCCTAGAGGGTAAGAAAAACATGCTGAAGCTCGCACAACGCATGACCGAGTACTTCTGCTCAGGGATCTGTGCTTCGTCTGTGCGCAAGTGGGAAATACTGAACATTGGTAATCTGGCTGATGACATGAGAATCATGGCCCGGAAAATCAATATGGATGACCCAACTGAGGCTCCTGGCATTGTGCTGAGTGCTTCAACTTCTGTTTGGATGCCGGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAAAATTTGAGAGGCGAGTGGGACATGCTGTCCAAAGATGGACCAATGAAGGAGATGCTCCATATTGCTAAAGGACAAGATCGTGGAAATTGTGTTTCCATCCTTCATTCTGCTAATAGCGAGTGCAATGTGCTATATCTGCAAGAATCATGGACTGATGCTTCCGGCTCATTGGTAGTGTATTCCCCGATCAACATGCAAGCCTTGAACATGGTGATGAACTGTGGAGATTCATCATTTGTCGCTCTCCGCCCATCAGGCTTTGCTATTCTGCCAGATGGCGCTTCAAACAACGGTGATGGCAGTGATGGTGGTGGCAGCTGCCTGCTTACAGTTGGGTTACAAATGTTGCCAAATGGAGACCAATCAACCAAGTTCACAATGGAGTCAGTTGTTACTGTCAATAGCCTCATCTCAAACACCATTCAGAAGGTCAAAGATGCACTTGGAGTTGCGTGA 2331 0.4625 MASVYTVDPHLFSSPFDISKQNPSTLNLAAQRRMEGHSEMGQIGESFDTSNLLGRLRDDEYESRSGSDNFDGGSGDDQDAGDDQPHKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKDALANPTCNNCGGPAIPGQISLEEHQTRMENARLKDELNRICALANKFLGRPLSPLASPMALPPSNSGLELAIGRNGIGGPSNFGMSLPMGFDVGDGVMGSSPGMSSMGARSPMGMMGNEIQLERSMLLDLALNAMNELIKMAQPDTSLWIKSSDGRNEVLNHDEYARLFSPYVGSKPAGYVTEATRGTGVVPASSLGIVETLMDVDRWAEMFSSMIASAATLEVLSSGMGESRSGALQVMLAEVQLLSPLVPARSLSFLRYSKQHGEGVWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGFSKITWVEHSQYDESVVHQLYRPLVSSGIGFGAQRWIATLLRQCDCLAILMSQIPSEDPTVISLEGKKNMLKLAQRMTEYFCSGICASSVRKWEILNIGNLADDMRIMARKINMDDPTEAPGIVLSASTSVWMPVSRQRVFDFLRDENLRGEWDMLSKDGPMKEMLHIAKGQDRGNCVSILHSANSECNVLYLQESWTDASGSLVVYSPINMQALNMVMNCGDSSFVALRPSGFAILPDGASNNGDGSDGGGSCLLTVGLQMLPNGDQSTKFTMESVVTVNSLISNTIQKVKDALGVA* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1185 776 Pfam Homeodomain 89 144 IPR001356 GO:0003677
Gso9g1185 776 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 30 774 - -
Gso9g1185 776 SUPERFAMILY Bet v1-like 543 745 - -
Gso9g1185 776 SUPERFAMILY Homeodomain-like 69 146 IPR009057 -
Gso9g1185 776 Pfam START domain 301 523 IPR002913 GO:0008289
Gso9g1185 776 ProSiteProfiles START domain profile. 291 527 IPR002913 GO:0008289
Gso9g1185 776 SMART HOX_1 88 150 IPR001356 GO:0003677
Gso9g1185 776 MobiDBLite consensus disorder prediction 60 96 - -
Gso9g1185 776 Gene3D - 300 511 IPR023393 -
Gso9g1185 776 CDD homeodomain 93 146 IPR001356 GO:0003677
Gso9g1185 776 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Gso9g1185 776 SMART START_1 300 524 IPR002913 GO:0008289
Gso9g1185 776 CDD START_ArGLABRA2_like 295 522 - -
Gso9g1185 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 774 IPR042160 -
Gso9g1185 776 Coils Coil 140 167 - -
Gso9g1185 776 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Gso9g1185 776 Gene3D - 76 162 - -
Gso9g1185 776 SUPERFAMILY Bet v1-like 293 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1185 Gso-Chr9 34131605 34138464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1185 34 773 Homeobox Transcription Factor Family AT3G61150 53.403 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g1185 START 2.8e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1185 K09338 - gmx:100820113 1467.21