Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1182 ATGGCAAAGCTGCCTGTGGAATACAACGGCGACTGCGCCACCACCGCCTCAGCATCCGCCTCCGCAGCCGCGGAGTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATTTCCTGGAACGACGACGGATCAACGTTTATCGTCTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTCAAACACAACAATTTCTCTAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGAAAAGTTGTACCTGATCGGTGGGAGTTCTCGAACGAGTATTTCCGCCGAGGCGAGAAGCGGCTTCTGTGCGAAATTCAGCGGCGGAAGATCTCCTCGCCGGCGTCGTCTCCGACGGCGCCGGCGACGGTTTCGGTCACTGCGCCGATGCCGTTGACTGCGATACCGATCATATCGCCGTCGAACTCCGGCGAGGAGCAGGTGACGTCGTCGAACTCATCGCCGGCGGAGCTTCTCGACGAGAACGAGCGACTGAGGAAAGAGAACGTTCAGTTAACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATTTATTCTCTCATGTCAAATTATGCAAACGCCAACGGAAAAGGAAACAGCAACGGCAGTTACAAAACTAAAGGCGGCGCCGGTGTCGCGCACGGAAGTTTAGAGTCCGGCATGACGGCGGTGAAGCTGCTGGATTTGATGCCGGTGATGCGAAGCTCCGATGAGGACGCGGCGGAGATGGCGCCGGAGGAGATGAATCCGAAGCTGTTTGGTGTGGCGATTGGAGCGAAGCGAGCGAGAGAGGGAGGAGGTGGTGGAGATTGTGGAGGTGGAGGAGAGGAAGATACGCTGCTGCGCCTGCATCACGCGGGTTCTGCGGACGTGAAATCTGAGCCGTTGGATTTCCAGAACCATCGCGAGAATCAGAAAACGCCGTGGTTGAGTCCGTGTTACAGGACAAATCAAAGAGTGTGCAACTGA 1017 0.5526 MAKLPVEYNGDCATTASASASAAAESQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKISSPASSPTAPATVSVTAPMPLTAIPIISPSNSGEEQVTSSNSSPAELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYANANGKGNSNGSYKTKGGAGVAHGSLESGMTAVKLLDLMPVMRSSDEDAAEMAPEEMNPKLFGVAIGAKRAREGGGGGDCGGGGEEDTLLRLHHAGSADVKSEPLDFQNHRENQKTPWLSPCYRTNQRVCN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1182 338 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Gso9g1182 338 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1182 338 Gene3D - 26 124 IPR036388 -
Gso9g1182 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 322 IPR027725 -
Gso9g1182 338 Coils Coil 176 196 - -
Gso9g1182 338 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1182 338 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1182 338 MobiDBLite consensus disorder prediction 152 172 - -
Gso9g1182 338 MobiDBLite consensus disorder prediction 152 175 - -
Gso9g1182 338 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 14 322 - -
Gso9g1182 338 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1182 338 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso9g1182 338 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1182 Gso-Chr9 34001674 34003359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1182 18 338 HSF AT5G62020 47.941 8.09e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso9g1182 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1182 K09419 - gmx:100817440 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1571 16 36240774 36242452 Gso9g1182 9 34001674 34003359 GST
Gso9g1182 9 34001674 34003359 Gso20g1257 20 42661635 42663069 PCT
Gso9g1182 9 34001674 34003359 Gso10g2120 10 48185142 48186433 PCT
Gso20g1257 20 42661635 42663069 Gso9g1182 9 34001674 34003359 PCT
Gso10g2120 10 48185142 48186433 Gso9g1182 9 34001674 34003359 PCT