Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1060 ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGCAAAGCTGCTACATTTACTGCCACCACAAACACAGAAACCCCACCCACCACTACCACCACCACCACCCCCAACACTACCTCTTGCTCGGGTTTGAGCCAAGAAAATGGCTCATTCTCTTTTCCCAATCTGGTGCAACCAACAACCAATGGGTTCCAAGAGCTTCAACACCAACAATTGTTAATAAACTTCAACCCCACCAACACCATTACTAGCACTAGCACTAGCACTAGCACTAGTGGCCTTGGCATCAATCCCAATTCCACGTTTTCTGAAGTTGCGGGATTCATTGGACAACAGCAGATACAGCAAAGTCTCCACCACCATCTCGTTCCTGCTCCCACAAATCACACCTTCATTGGAACACCCTCCACTACTGGTTTTGACAGGTTCCAACAACAGCAACTCCAAACCCCAGAACAACAGCAACCACAGCAAAACCAACCACCCCTTCAAGCACCACAAACAAGTCACATCCTTTCACCAACCACACAACCACAAACACCCAGATCAAGAAAAAGAAAGAGCCAGCAGAAGAAAATGGTATGCCATGTAACCGCACAAAACCTCTCATCAGACTTGTGGGCATGGCGAAAATATGGACAAAAACCCATCAAAGGCTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGATGCGCTGCGAGAAAGCAAGTAGAGCGAAGCACCAGCGAACCCAACACGTTCATCGTGACCTACACCGGCGACCACAAACACGCGAAACCCGTTCACCGGAACTCCCTCGCCGGCAACACCAGAACAAAACTATCCACCACCCGTTTACCCGAAACCCATGAAACCGTGTCTTGTGTAATAATAGAAAACGCATGCTCTTCAAACTCTGAGCTTTCTCCCATGTCGGTAAGGTCCGACACGCTGGAAAACGAGGCAACGCTCGTACCCGGCGAACCCGATTGCCCGGACACGGATATTGACCCTGAGGTGCCCTCTGAAGAAGACGAAGACGTTTTGATACCCAACACAGGTGCCATGTCAGACTCGATTTTCTTGGGGTTGACCAATTTTGACCGCGACGGCGTTTCCACGCTTTAA 1125 0.4916 MTHEDWDLFAIVRSCKAATFTATTNTETPPTTTTTTTPNTTSCSGLSQENGSFSFPNLVQPTTNGFQELQHQQLLINFNPTNTITSTSTSTSTSGLGINPNSTFSEVAGFIGQQQIQQSLHHHLVPAPTNHTFIGTPSTTGFDRFQQQQLQTPEQQQPQQNQPPLQAPQTSHILSPTTQPQTPRSRKRKSQQKKMVCHVTAQNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTSEPNTFIVTYTGDHKHAKPVHRNSLAGNTRTKLSTTRLPETHETVSCVIIENACSSNSELSPMSVRSDTLENEATLVPGEPDCPDTDIDPEVPSEEDEDVLIPNTGAMSDSIFLGLTNFDRDGVSTL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1060 374 Gene3D WRKY domain 188 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g1060 374 SUPERFAMILY WRKY DNA-binding domain 199 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g1060 374 MobiDBLite consensus disorder prediction 322 341 - -
Gso9g1060 374 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g1060 374 Pfam WRKY DNA -binding domain 207 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g1060 374 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 366 - -
Gso9g1060 374 MobiDBLite consensus disorder prediction 23 48 - -
Gso9g1060 374 MobiDBLite consensus disorder prediction 127 185 - -
Gso9g1060 374 MobiDBLite consensus disorder prediction 127 196 - -
Gso9g1060 374 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 366 IPR044810 GO:0003700
Gso9g1060 374 SMART WRKY_cls 205 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1060 Gso-Chr9 30694597 30696523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1060 184 279 WRKY Transcription Factor Family AT5G52830 80.208 3.62e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g1060 WRKY 6.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1060 - K13425 gsj:114367469 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1452 16 34768087 34769942 Gso9g1060 9 30694597 30696523 GST
Gso9g1060 9 30694597 30696523 Gso20g1312 20 43136402 43138536 PCT
Gso9g1060 9 30694597 30696523 Gso10g2057 10 47580193 47582123 PCT
Gso20g1312 20 43136402 43138536 Gso9g1060 9 30694597 30696523 PCT
Gso10g2057 10 47580193 47582123 Gso9g1060 9 30694597 30696523 PCT