Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1039 ATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGGCTTGGGTTGAGCTCAGGCCAGAAATGGATTGGCGGGAACCGTGACTCTGATGAGCTTTCCGTGGAGCTGATTGTGCAGGAGCTCAAGAATCTGGTGGTTGAAGGAAGGAGCAGCAACGTTACATTTGAGGACTTTCCTTATTATTTAAGTGAAAGAACTCAAGCTTTGTTGACAAGTGCTGCATATGTTCATTTAAAAAGTCTTCACTTTTCCAAGCACACCAGGAACCTCCCACCAGCAAGCAGGGCTATTTTGCTATCTGGTCCAGCAGAACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTATTAGATATTACTGACTTTTCTGTGAAGTTGCAGAATAAATTTGGATGTTCTAGAAAAGAACCATCTTTCAAAAGGTCAATATCCGAGGTAACTCTGGAGAGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGATTTCTTCAACAGGAGAAACAAGAGGAATTCTGCGTCAACAAAGCAGTGCATTTGTAAGTTCCAATCCTCCAAAGCTTAGGAGGAATGCCTCTGCTTCATCTGATATAAGTAGCACTTCTTCCCAATGTGGTCCAACATTTCCAGCTCCTTTAAAGCGCACAAGTAGCTTGTGTTTTGATGAAAAGCTCTTTGTGCAGTCACTTTACAAGCTTTTGGTTTTTATCACAGAAACTAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCGTTCTCCAATCACCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGTTCAGTGTTGATCCTTGGTTCCCAGATATTAGATTCAGAAGATGATTGCAAAGAAGTTGATGAAAGGTTCTCTGCACTATTCCCCTACAACATTGAGATCAAAGCTCCTGAAGATGAAACTCATCTTGGCAGTTGGAAAGGCCAACTGGAAAAGGACATGAAAGATATTCAGTTCCAAGATAATAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGACTTGAACTCAATCTGCCATGGAGACACTATCTTACTCAGTAATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGAGAAGATATTACTGGTGCAAAGAATGAAGTGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATACCAGTAACGAAGAAAGATGGCGAAAATCCTACACCTGCAAAAGCTGAAGTTCCTGACAACGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTGCGTTGGATGAGATTAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCAGACCTCTTCAAAGGTGGGCTTCTGAAGCCATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTGCAAATGAAGCTGGTGCAAGTTTCATCAATGTCTCAATGTCAACCATCACATCAAAATGGTTTGGAGAGGATGAAAAGAACGTCCGAGCTCTGTTCACACTGGCAGCTAAGGTTGCCCCAACAATTATCTTTGTTGACGAGGTTGACAGTATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACTGGACCTAATGAGCAAATTTTGGTTCTCGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAGAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGCGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAACTAATACAGCAGGAGAGACTGAAGGACATGGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGCTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAACAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAACAACAACTCACTTACTTCCTATAG 2454 0.4152 MEQKHVLLSALSVGVGLGVGLGLSSGQKWIGGNRDSDELSVELIVQELKNLVVEGRSSNVTFEDFPYYLSERTQALLTSAAYVHLKSLHFSKHTRNLPPASRAILLSGPAEPYQQMLAKALAHYFESKLLLLDITDFSVKLQNKFGCSRKEPSFKRSISEVTLERMSGLFGSFSMISSTGETRGILRQQSSAFVSSNPPKLRRNASASSDISSTSSQCGPTFPAPLKRTSSLCFDEKLFVQSLYKLLVFITETSSIILYIRDVEKLVLQSPRLYNLLQKMIKKLSGSVLILGSQILDSEDDCKEVDERFSALFPYNIEIKAPEDETHLGSWKGQLEKDMKDIQFQDNRNHIAEVLAANDIDCDDLNSICHGDTILLSNYIEEIVVSALSYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDITGAKNEVKCDNQAPENKSETEKSIPVTKKDGENPTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRILVGLPSVENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERLKDMEKKKREAEGQSSEDASNNKDKEEQEITLRPLNMEDMRQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1039 817 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Gso9g1039 817 CDD AAA 542 675 - -
Gso9g1039 817 Coils Coil 728 748 - -
Gso9g1039 817 Pfam AAA+ lid domain 696 740 IPR041569 -
Gso9g1039 817 Gene3D - 503 784 IPR027417 -
Gso9g1039 817 MobiDBLite consensus disorder prediction 737 781 - -
Gso9g1039 817 SMART AAA_5 540 677 IPR003593 -
Gso9g1039 817 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 817 - -
Gso9g1039 817 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 817 - -
Gso9g1039 817 MobiDBLite consensus disorder prediction 191 219 - -
Gso9g1039 817 Gene3D - 676 779 - -
Gso9g1039 817 MobiDBLite consensus disorder prediction 737 768 - -
Gso9g1039 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 733 IPR027417 -
Gso9g1039 817 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Gso9g1039 817 MobiDBLite consensus disorder prediction 434 484 - -
Gso9g1039 817 MobiDBLite consensus disorder prediction 422 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1039 Gso-Chr9 29624943 29632356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1039 504 735 Calmodulin-binding Proteins AT3G56690 39.407 2.89e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1039 - - gmx:100804099 1570.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1422 16 34220877 34243777 Gso9g1039 9 29624943 29632356 GST
Gso20g1317 20 43197537 43205262 Gso9g1039 9 29624943 29632356 PCT
Gso10g2049 10 47511406 47519157 Gso9g1039 9 29624943 29632356 PCT