Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0956 ATGCTGGAAATCTCAACTTCACATGAAACCCCGCTAGAGAACGCGGACGGCGGCTCCGCGGCGGTCTCGGACGGGTCGAAAGCCGAGCACGGCGAGGACGATGACCGGAATCCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCCGAAATGGACGTTGCTTTCAAAGACGCAAACCTCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTATCGGAGCTAGGTTATAATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACTAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTACCGATTTTTCGAGCAATTGGAAGCTTTAGACGGAAACCACTCACTTCTTCCTCCGACAACAACCGTTGGTGATGATGTTGTCCTGAACGCGGTTCCGTGTTCGGTTAGTGCGGCGGCGCACGAGCATTCGAGTTCGACAACGTCGTGTTCGGGGAAGAAGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTTGTGGAAGTGTTGGACAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAAAGGATCAAGAAAGAACGCGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCTGCCAAAGACGAAGTTGTTCTTGCTTTTCTTAGAAAGTTTGCAGAAGCAGAAGGCACGGTGCAGTTACTCGAGAAAATTCAGGTTCAAAACGACAAACAGAAAAACATGAAACAAAATGGCGGTAATGATAATGCTAATGGAGGTGGTGGTGTCACAGTTGTCACTGATATGGATAAACAAGAATGTGGAAATACTAATGTTCGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCTCGTTGGCCGAAGGATGAAGTGGAGGCATTGATAAGGTTAAGGACTCAAATTGATGTGCAGGCACAATGGAATAATAATAACAATAACAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTCGGCTATGAAGAGCCTTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAGGATAAAGGAGAAGAGCAAGAGGAAGCCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTGATGCATATCATGGTGAGTCAAAGTCAAGAACAGCAACAAGAGATGCAGACTCAGACTCAGTCACCATCTGAAGATGCTGAGAGAGATCAGAATCAGGGAGATAATGAAGATCAAAGTGAGTATCAGACTCAGATGGTTGATAATAATAGTCCTTCCATTGCAATTATGAGTTAA 1473 0.4589 MLEISTSHETPLENADGGSAAVSDGSKAEHGEDDDRNPAANRWPREETMALLKIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLLPPTTTVGDDVVLNAVPCSVSAAAHEHSSSTTSCSGKKKRKLTQFLEGLMREVIEKQETLQRKFVEVLDKCEKDRMAREEAWKKEELERIKKERELLAQERSIAAAKDEVVLAFLRKFAEAEGTVQLLEKIQVQNDKQKNMKQNGGNDNANGGGGVTVVTDMDKQECGNTNVRVSVGNFVHMSSSRWPKDEVEALIRLRTQIDVQAQWNNNNNNNNGSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRKPQDSKTCPYYHHLEALYSKKPKKVDHGNELKPEELLMHIMVSQSQEQQQEMQTQTQSPSEDAERDQNQGDNEDQSEYQTQMVDNNSPSIAIMS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0956 490 Coils Coil 221 243 - -
Gso9g0956 490 SMART sant 39 101 IPR001005 -
Gso9g0956 490 SMART sant 317 386 IPR001005 -
Gso9g0956 490 MobiDBLite consensus disorder prediction 26 44 - -
Gso9g0956 490 MobiDBLite consensus disorder prediction 440 490 - -
Gso9g0956 490 CDD GT1 41 106 - -
Gso9g0956 490 CDD GT1 319 391 - -
Gso9g0956 490 MobiDBLite consensus disorder prediction 469 490 - -
Gso9g0956 490 Pfam Myb/SANT-like DNA-binding domain 319 413 IPR044822 -
Gso9g0956 490 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Gso9g0956 490 PANTHER - 1 488 - -
Gso9g0956 490 ProSiteProfiles Myb-like domain profile. 319 384 IPR001005 -
Gso9g0956 490 Gene3D - 43 104 - -
Gso9g0956 490 Gene3D - 321 389 - -
Gso9g0956 490 MobiDBLite consensus disorder prediction 1 44 - -
Gso9g0956 490 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Gso9g0956 490 MobiDBLite consensus disorder prediction 440 459 - -
Gso9g0956 490 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0956 Gso-Chr9 24294531 24296932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0956 316 429 Trihelix Transcription Factor Family AT1G76880 37.719 3.31e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso9g0956 Myb_DNA-bind_4 2.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0956 - - gmx:100787329 899.042