Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0946 ATGCTACAGATAAACATTTCATCATCTCAAGAAGCTATAGCATTGTTTTTTTTTTTTTTTATCTCATTTTCTGCATTGTTGAGTCAGAAATCCCATTTTGCTTTTACCCTCAGATCTCATCTCAGGATCCATAACATGACTTCCGCACGGAATAAGCATCCTTTGCCTCCTGCAGTTCATTTCGTTAAGATTATTCTCACAACAAGTCTTGCAGATGGAATACTTCTTCCAAAAAAATTCACTCGAAAATACGGGGATGGCATGTCAAACCCGGTGTTTCTCAAGCCTGCAGATGGCACTGAATGGAAAATACATTATACCAAGCATGGTGGTGAGATTTGGTTTCAAAAGGGTTGGAAAGAGTTTGCAACATACTATTCTCTAGATCATGGTCACTTGCTGTTCTTTGAATATGAAGGAACTTCTCATTTTGATGTGCACATATTTGACAGTAGTGCCCTTGAAATAGACTATCCTTCCCATGGTACTCATGAGGGAAAGGACAATCTTGTGGAGATCAGTGATGATTCGGTGGAAATTTTGGGTGAGCAATTTTCCTGCCAAAACACTAGAGGGTCATCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTCGAAAGAAGCCCCAATGTGGTAAACTTGCATCAGCATGTCCCAACTATAAGTAATAGCTCTCAAAAGGCAACATTCATGAAGCAAATGTTAGATGAAGATGATGGCATAGGCATTTTTAACACCGAATACCCAAAAGTAGAGCAGTCAACTTCTACGGCTTTAAAAAAAGCCTCAACATTCAGATCTGAACATCCCTTCTTCAGGCTTGTCATGAAGCCATCCTTTATTAATAGATATTACCTGGAAATACCACCTCAATTTGCCGAAAGATATTTGAAGAAAACACATGCAATTGTCATCCTTGAGATTTTGGATGGGAGAACTTGGTCTGTTATTTGTTCTGCAACTAGACTTACTGAGGGATGGCAGAAATTTGCATCAGAAAATAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACTGATCCAGAAGATCCAGGGCCTTTGTTTTAAGGTTTCCATCTATCAAGGTGCTGAAGAACCAATTTGCCCCATTTCACAAGCATGTGCCGATGGACTTTGTCAGAAAGCATTTAGTAAACGTGAAGCAGAAGTTGATGATGATACACTTTAG 1200 0.3875 MLQINISSSQEAIALFFFFFISFSALLSQKSHFAFTLRSHLRIHNMTSARNKHPLPPAVHFVKIILTTSLADGILLPKKFTRKYGDGMSNPVFLKPADGTEWKIHYTKHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDSSALEIDYPSHGTHEGKDNLVEISDDSVEILGEQFSCQNTRGSSPQPCKKMKNSITTNVERSPNVVNLHQHVPTISNSSQKATFMKQMLDEDDGIGIFNTEYPKVEQSTSTALKKASTFRSEHPFFRLVMKPSFINRYYLEIPPQFAERYLKKTHAIVILEILDGRTWSVICSATRLTEGWQKFASENNLNVGDVCVFELIQKIQGLCFKVSIYQGAEEPICPISQACADGLCQKAFSKREAEVDDDTL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0946 399 Gene3D - 57 153 IPR015300 -
Gso9g0946 399 CDD B3_DNA 274 364 IPR003340 GO:0003677
Gso9g0946 399 CDD B3_DNA 60 150 IPR003340 GO:0003677
Gso9g0946 399 SUPERFAMILY DNA-binding pseudobarrel domain 58 152 IPR015300 -
Gso9g0946 399 SMART B3_2 275 367 IPR003340 GO:0003677
Gso9g0946 399 SMART B3_2 61 152 IPR003340 GO:0003677
Gso9g0946 399 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 29 377 IPR039218 -
Gso9g0946 399 Gene3D - 255 368 IPR015300 -
Gso9g0946 399 ProSiteProfiles B3 DNA-binding domain profile. 59 152 IPR003340 GO:0003677
Gso9g0946 399 ProSiteProfiles B3 DNA-binding domain profile. 275 367 IPR003340 GO:0003677
Gso9g0946 399 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 29 377 - -
Gso9g0946 399 Pfam B3 DNA binding domain 275 362 IPR003340 GO:0003677
Gso9g0946 399 Pfam B3 DNA binding domain 70 151 IPR003340 GO:0003677
Gso9g0946 399 SUPERFAMILY DNA-binding pseudobarrel domain 270 364 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0946 Gso-Chr9 23920860 23924176 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0946 57 365 B3 DNA Binding Superfamily AT3G18990 29.499 7.13e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso9g0946 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0946 - - gmx:100818507 807.364